Afipia sp. 1NLS2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Afipia

Description

Afipia sp. 1NLS2 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which suggests a potential for motility. It possesses a single replicon, indicating a streamlined genomic structure that may influence its replication and adaptability. The accession number for Afipia sp. 1NLS2 is ADVZ00000000.1, which provides a reference for further genetic and genomic studies. Based on its traits, Afipia sp. 1NLS2 may play a role in various ecological niches, potentially contributing to microbial diversity and interactions within its environment. The presence of flagella could facilitate its movement towards nutrients or away from unfavorable conditions, enhancing its survival and ecological interactions. The Gram-negative nature of this bacterium is significant, as it typically indicates a complex cell wall structure that may confer resistance to certain antibiotics and influence its ecological relationships. In summary, Afipia sp. 1NLS2 exhibits traits typical of motile, Gram-negative bacteria, with implications for its ecological roles and potential interactions in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusAfipia
SpeciesAfipia sp. 1NLS2
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Afipia sp. 1NLS2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afipia sp. 1NLS2 ctg00003, whole genome shotgun sequence.

Gene Summary

Adenine Count

769968 bp

Thymine Count

767149 bp

Guanine Count

1216555 bp

Cytosine Count

1218084 bp

Genome Length

3971756 bp

Protein-coding Genes

3804 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
selenocysteine-specific translation elongation factorAfiDRAFT_0287Not AvailableNegative291971 - 29407075163.9
sel1 domain protein repeat-containing proteinAfiDRAFT_0288Not AvailableNegative294070 - 29489128774.2
l-seryl-trna selenium transferaseAfiDRAFT_0289Not AvailableNegative294891 - 29630649601.1
formate dehydrogenase accessory protein fdheAfiDRAFT_0290Not AvailableNegative296317 - 29723132674.2
formate dehydrogenase, gamma subunitAfiDRAFT_0291Not AvailableNegative297371 - 29804225133.9
formate dehydrogenase, beta subunitAfiDRAFT_0292Not AvailableNegative298039 - 29897734059.7
formate dehydrogenase, alpha subunitAfiDRAFT_0293Not AvailableNegative298993 - 30141990414.6
molybdopterin oxidoreductase fe4s4 regionAfiDRAFT_0294Not AvailableNegative301468 - 30206721929.5
alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergenAfiDRAFT_0295Not AvailablePositive302532 - 30310120775.8
transglutaminase domain proteinAfiDRAFT_0296Not AvailablePositive303128 - 30423440124.1

Displaying genes 321 – 330 of 3877 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.