Afipia sp. 1NLS2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Afipia

Description

Afipia sp. 1NLS2 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which suggests a potential for motility. It possesses a single replicon, indicating a streamlined genomic structure that may influence its replication and adaptability. The accession number for Afipia sp. 1NLS2 is ADVZ00000000.1, which provides a reference for further genetic and genomic studies. Based on its traits, Afipia sp. 1NLS2 may play a role in various ecological niches, potentially contributing to microbial diversity and interactions within its environment. The presence of flagella could facilitate its movement towards nutrients or away from unfavorable conditions, enhancing its survival and ecological interactions. The Gram-negative nature of this bacterium is significant, as it typically indicates a complex cell wall structure that may confer resistance to certain antibiotics and influence its ecological relationships. In summary, Afipia sp. 1NLS2 exhibits traits typical of motile, Gram-negative bacteria, with implications for its ecological roles and potential interactions in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusAfipia
SpeciesAfipia sp. 1NLS2
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Afipia sp. 1NLS2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afipia sp. 1NLS2 ctg00003, whole genome shotgun sequence.

Gene Summary

Adenine Count

769968 bp

Thymine Count

767149 bp

Guanine Count

1216555 bp

Cytosine Count

1218084 bp

Genome Length

3971756 bp

Protein-coding Genes

3804 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
penicillin-binding protein, 1a familyAfiDRAFT_2098Not AvailablePositive2150300 - 215278990875.3
peptide chain release factor 2AfiDRAFT_2099Not AvailablePositive2153045 - 215401335597.7
bifunctional deaminase-reductase domain proteinAfiDRAFT_2100Not AvailablePositive2154036 - 215469523738.4
peptidase m23AfiDRAFT_2101Not AvailableNegative2154712 - 215605849396.6
alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergenAfiDRAFT_2102Not AvailableNegative2156129 - 215672221221.8
conserved hypothetical proteinAfiDRAFT_2103Not AvailablePositive2156986 - 2160564126627.0
tyrosyl-trna synthetaseAfiDRAFT_2104Not AvailableNegative2160579 - 216183245967.4
protein of unknown function upf0075AfiDRAFT_2105Not AvailablePositive2161915 - 216301238498.7
alpha/beta hydrolase fold proteinAfiDRAFT_2106Not AvailableNegative2163018 - 216366523916.8
cysteine desulfuraseAfiDRAFT_2107Not AvailablePositive2163870 - 216505140712.3

Displaying genes 2121 – 2130 of 3877 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.