Clostridioides difficile NAP08

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile NAP08 is a Gram-positive, rod-shaped bacterium that exhibits a chemoorganotrophic lifestyle, relying on organic compounds for energy. This species is classified as an anaerobe, meaning it thrives in environments devoid of oxygen, which aligns with its natural habitat of being host-associated. C. difficile NAP08 is capable of mobility due to the presence of flagella, allowing it to navigate through its anaerobic environment. In terms of its cellular arrangement, C. difficile NAP08 can be found in chains, pairs, or as single cells. This versatile arrangement may contribute to its adaptability in diverse microenvironments within a host. The bacterium has a mesophilic temperature range, with an optimal growth temperature of 37°C, which corresponds to the average body temperature of mammals, further indicating its host-associated nature. C. difficile NAP08 possesses a single replicon and a single membrane, characteristics typical of many members of the Clostridia class. As a free-living organism, it can exist independently in certain conditions, although it primarily interacts with host organisms, which may influence its ecological dynamics. Understanding the traits of C. difficile NAP08, particularly its anaerobic metabolism and mobility, provides insight into its role in the gastrointestinal microbiome. This adaptation may allow C. difficile NAP08 to colonize the intestines of hosts efficiently, where it can thrive and potentially contribute to health or disease states, particularly in the context of antibiotic resistance and infections.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNAP08

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile NAP08
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridioides difficile NAP08


Gene Summary

Adenine Count

1509986 bp

Thymine Count

1348598 bp

Guanine Count

666966 bp

Cytosine Count

496483 bp

Genome Length

4022033 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
CspHMPREF0220_2335Not AvailablePositive2457285 - 24574857124.35
cbs domain proteinHMPREF0220_2336Not AvailablePositive2457894 - 245833416779.1
ppic-type ppiase domain proteinHMPREF0220_2337Not AvailableNegative2458477 - 245926229706.3
hypothetical proteinHMPREF0220_2338Not AvailableNegative2459353 - 245976916624.0
Hypothetical proteinHMPREF0220_2339Not AvailableNegative2459933 - 246043919471.6
Putative repressor proteinHMPREF0220_2340Not AvailableNegative2460521 - 246084112567.0
Xre family transcriptional regulatorHMPREF0220_2341Not AvailablePositive2461010 - 24612077581.47
Hypothetical proteinHMPREF0220_2342Not AvailablePositive2461311 - 246175117573.2
Hypothetical proteinHMPREF0220_2343Not AvailablePositive2462000 - 246244317178.7
Putative tail sheath proteinHMPREF0220_2344Not AvailablePositive2462448 - 246351239234.8

Displaying genes 1 – 10 of 3809 in total

Metabolites

372 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 372 metabolites

Health Effects

No health effects information available for this bacterium.