Bacteroides ovatus SD CMC 3f

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides ovatus SD CMC 3f is a Gram-negative, anaerobic bacterium characterized by its rod shape and the presence of flagella. This organism is part of the Bacteroides genus, known for its role in the human gut microbiome, where it contributes to the breakdown of complex carbohydrates and plays a significant role in digestion. The strain SD CMC 3f possesses a single replicon, indicating a streamlined genomic organization that may be advantageous for its survival in anaerobic environments, such as the human intestine. The presence of flagella suggests that this bacterium is motile, which could facilitate its movement through the gut environment, allowing it to access nutrients and interact with other microbial species. Understanding the traits of Bacteroides ovatus SD CMC 3f can provide insights into its ecological roles within the gut microbiome. As an anaerobe, it thrives in low-oxygen conditions, which are typical of the intestinal tract. Its ability to utilize complex carbohydrates reflects its potential contribution to the fermentation processes that produce short-chain fatty acids, important metabolites for gut health. This bacterium’s characteristics highlight its importance in maintaining a balanced gut microbiota, which is essential for overall human health and well-being. In summary, Bacteroides ovatus SD CMC 3f exemplifies a specialized and adaptable organism that plays a critical role in the anaerobic digestion of carbohydrates in the human gut ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides ovatus
StrainSD CMC 3f

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides ovatus SD CMC 3f
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides ovatus SD CMC 3f


Gene Summary

Adenine Count

1950643 bp

Thymine Count

1983045 bp

Guanine Count

1439557 bp

Cytosine Count

1402032 bp

Genome Length

6775279 bp

Protein-coding Genes

5246 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCUY_0970Not AvailablePositive1520376 - 152185155311.6
Head maturation proteaseCUY_0971Not AvailablePositive1521869 - 152242020744.4
Major capsid proteinCUY_0972Not AvailablePositive1522420 - 152363743691.8
Head-tail connector proteinCUY_0973Not AvailablePositive1523639 - 152394411508.8
Head-tail adaptor gp7CUY_0974Not AvailablePositive1524288 - 15245279496.3
Putative phage major tail proteinCUY_0975Not AvailablePositive1525348 - 152580315779.3
conserved hypothetical proteinCUY_0976Not AvailablePositive1525854 - 152615011604.9
conserved hypothetical proteinCUY_0977Not AvailablePositive1526219 - 15264619322.03
1_nc_021790: putative tail length tape measure proteinCUY_0978Not AvailablePositive1526468 - 152827666416.7
hypothetical proteinCUY_0979Not AvailablePositive1528276 - 153067292489.1

Displaying genes 11 – 20 of 5360 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

298 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 298 metabolites

Health Effects

No health effects information available for this bacterium.