Odoribacter laneus YIT 12061

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Odoribacteraceae

Genus

Odoribacter

Description

Odoribacter laneus YIT 12061 is a Gram-negative bacterium characterized by having a single replicon. This organism is cataloged under the accession number ADMC00000000.1, which provides a reference for genomic and taxonomic information. The classification of Odoribacter laneus within the domain of bacteria highlights its potential role in various ecological and biological contexts. Being Gram-negative suggests that it possesses a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides, traits often associated with pathogenicity, antibiotic resistance, and specific metabolic capabilities. While specific metabolic pathways and ecological roles of Odoribacter laneus are not detailed in the available data, its classification within the Odoribacter genus may imply its involvement in diverse environments, possibly including anaerobic digestion processes or as part of the gut microbiota. Understanding the characteristics of Odoribacter laneus can contribute to our knowledge of microbial diversity and interactions within ecosystems, especially given the significance of microbiomes in health and environmental sustainability. Further research on this organism could yield insights into its ecological roles and potential applications in biotechnology or medicine.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyOdoribacteraceae
GenusOdoribacter
SpeciesOdoribacter laneus
StrainYIT 12061

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Odoribacter laneus YIT 12061 cont1.42, whole genome shotgun

Gene Summary

Adenine Count

1131366 bp

Thymine Count

1100213 bp

Guanine Count

718607 bp

Cytosine Count

803275 bp

Genome Length

3753461 bp

Protein-coding Genes

3096 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
6,7-dimethyl-8-ribityllumazine synthaseHMPREF9449_01875Not AvailableNegative2226578 - 222703916095.6
gtp cyclohydrolase iiHMPREF9449_01876Not AvailableNegative2227061 - 222831446429.6
riboflavin synthase, alpha subunitHMPREF9449_01877Not AvailableNegative2228369 - 222900423143.2
riboflavin biosynthesis protein ribdHMPREF9449_01878Not AvailableNegative2229015 - 223012740834.8
hypothetical proteinHMPREF9449_01879Not AvailableNegative2230298 - 22304355126.3
hypothetical proteinHMPREF9449_01880Not AvailableNegative2230419 - 223193956498.8
tat (twin-arginine translocation) pathway signal sequenceHMPREF9449_01881Not AvailableNegative2231990 - 223292834259.8
hypothetical proteinHMPREF9449_01882Not AvailableNegative2232984 - 223338215219.7
hypothetical proteinHMPREF9449_01883Not AvailableNegative2233372 - 223389318865.0
2-amino-3-ketobutyrate coenzyme a ligaseHMPREF9449_01884Not AvailablePositive2234391 - 223558143775.7

Displaying genes 1911 – 1920 of 3169 in total

Metabolites

594 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 594 metabolites

Health Effects

No health effects information available for this bacterium.