Edwardsiella tarda ATCC 23685

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Edwardsiella

Description

Edwardsiella tarda ATCC 23685 is a Gram-negative, rod-shaped bacterium notable for its motility due to the presence of flagella. This species is part of the Enterobacteriaceae family and is known for its pathogenic potential, particularly in aquatic organisms and humans. The bacterium has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and survival in various environments. The genomic data for Edwardsiella tarda ATCC 23685 can be accessed under the accession number ADGK00000000.1, which provides a basis for further studies regarding its genetics and pathogenic mechanisms. From an ecological perspective, Edwardsiella tarda is frequently associated with fish, where it can cause significant morbidity and mortality. Its presence in aquatic environments highlights its role in the dynamics of microbial communities, particularly in relation to host-pathogen interactions. Understanding the traits and behaviors of Edwardsiella tarda can inform management practices in aquaculture and help mitigate its impact on fish populations and related ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusEdwardsiella
SpeciesEdwardsiella tarda
StrainATCC 23685

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Edwardsiella tarda ATCC 23685
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Edwardsiella tarda ATCC 23685 E_tarda-1.0_Cont610.1, whole genome

Gene Summary

Adenine Count

778581 bp

Thymine Count

777127 bp

Guanine Count

1040444 bp

Cytosine Count

1035372 bp

Genome Length

3631524 bp

Protein-coding Genes

3877 genes

Non-Coding Genes

202 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4fe-4s binding domain proteinEDWATA_01229Not AvailableNegative1165100 - 116575624561.4
hypothetical proteinEDWATA_01230Not AvailableNegative1165815 - 116641922308.5
aldehyde ferredoxin oxidoreductase, tungsten cofactor-binding domain proteinEDWATA_01231Not AvailableNegative1166539 - 116864476827.5
4fe-4s binding domain proteinEDWATA_01232Not AvailableNegative1168749 - 116937522224.9
hypothetical proteinEDWATA_01233Not AvailableNegative1169477 - 11696838211.9
hypothetical proteinEDWATA_01234Not AvailablePositive1169723 - 117001910994.2
nudix-type nucleoside diphosphatase, yffh/adpp familyEDWATA_01235Not AvailablePositive1170019 - 117059121930.3
malate dehydrogenase (oxaloacetate-decarboxylating)EDWATA_01236Not AvailablePositive1170807 - 117308681928.7
hypothetical proteinEDWATA_01237Not AvailablePositive1173181 - 117399929920.5
yaii/yqxd family proteinEDWATA_01238Not AvailableNegative1173985 - 117443716393.9

Displaying genes 1301 – 1310 of 4079 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

605 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 605 metabolites

Health Effects

No health effects information available for this bacterium.