Pyramidobacter piscolens W5455

rodanaerobic

Kingdom

Thermotogati

Phylum

Synergistota

Class

Synergistia

Order

Synergistales

Family

Dethiosulfovibrionaceae

Genus

Pyramidobacter

Description

Pyramidobacter piscolens W5455 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This species is non-motile, indicating that it does not possess mechanisms for active movement. The optimal growth temperature for Pyramidobacter piscolens W5455 is 29 degrees Celsius, positioning it within the mesophilic temperature range, which typically spans from 20 to 45 degrees Celsius. Genetically, Pyramidobacter piscolens W5455 contains a single replicon, which is indicative of its genomic organization and may reflect its evolutionary adaptations. The accession number for this organism is ADFP00000000.1, which provides a reference for further genomic study and classification. From an ecological perspective, the anaerobic nature of Pyramidobacter piscolens W5455 suggests that it thrives in environments devoid of oxygen, which could include various anoxic habitats such as sediments, intestines of animals, or other specialized ecological niches. Understanding the characteristics of Pyramidobacter piscolens W5455 can contribute to insights into its role in microbial communities, particularly in anaerobic environments, and its potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomThermotogati
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilyDethiosulfovibrionaceae
GenusPyramidobacter
SpeciesPyramidobacter piscolens
StrainW5455

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pyramidobacter piscolens W5455 contig00282, whole genome shotgun

Gene Summary

Adenine Count

514164 bp

Thymine Count

514721 bp

Guanine Count

766818 bp

Cytosine Count

766310 bp

Genome Length

2562014 bp

Protein-coding Genes

2714 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulator, gntr familyHMPREF7215_2495Not AvailablePositive68954 - 7141388988.0
hypothetical proteinHMPREF7215_2496Not AvailablePositive71406 - 7179515266.9
chloride transporter, clc familyHMPREF7215_0411Not AvailableNegative72632 - 7399648287.6
hypothetical proteinHMPREF7215_0412Not AvailableNegative74015 - 7445215969.4
lipid a biosynthesis (kdo)2-(lauroyl)-lipid iva acyltransferaseHMPREF7215_0413Not AvailableNegative74454 - 7533232302.7
phosphoglycerate mutase 1 familyHMPREF7215_0414Not AvailableNegative75436 - 7618528366.9
hypothetical proteinHMPREF7215_0415Not AvailablePositive76204 - 763355037.03
ribosomal protein s4HMPREF7215_0416Not AvailableNegative76351 - 7697122864.1
hypothetical proteinHMPREF7215_0417Not AvailableNegative77137 - 7752314125.0
branched-chain amino acid abc transporter, permease proteinHMPREF7215_0418Not AvailableNegative77520 - 7863240405.7

Displaying genes 151 – 160 of 2818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

454 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 454 metabolites

Health Effects

No health effects information available for this bacterium.