Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae CIP 102761 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1496724 bp
Thymine Count
1497166 bp
Guanine Count
1023938 bp
Cytosine Count
1028473 bp
Genome Length
5046328 bp
Protein-coding Genes
3495 genes
Non-Coding Genes
259 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion cytoplasmic protein (ysck) | VDA_000182 | Not Available | Negative | 4583193 - 4583858 | 26061.5 |
| type iii secretion bridge between inner and outermembrane lipoprotein (yscj,hrcj,escj pscj) | VDA_000183 | Not Available | Negative | 4583851 - 4584648 | 29171.0 |
| putative type iii export protein | VDA_000184 | Not Available | Negative | 4585004 - 4585525 | 19505.2 |
| putative type iii secretion protein | VDA_000185 | Not Available | Negative | 4585525 - 4585731 | 7296.63 |
| type iii export protein yscf | VDA_000186 | Not Available | Negative | 4585885 - 4586133 | 9270.97 |
| type iii secretion inner membrane protein yscd | VDA_000187 | Not Available | Negative | 4586343 - 4587644 | 48230.6 |
| type iii secretion system outer membrane pore yscc | VDA_000188 | Not Available | Negative | 4587650 - 4589524 | 68916.1 |
| hypothetical protein | VDA_000189 | Not Available | Negative | 4589965 - 4590942 | 37900.0 |
| type iii secretion host injection and negative regulator protein (yopd) | VDA_000190 | Not Available | Negative | 4591945 - 4592805 | 30360.3 |
| type iii secretion host injection protein (yopb) | VDA_000191 | Not Available | Negative | 4592815 - 4593936 | 39266.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


