Photobacterium damselae subsp. damselae CIP 102761

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae subsp. damselae CIP 102761 is a Gram-negative bacterium characterized by its motility and the presence of flagella, which contribute to its ability to move in aquatic environments. This species thrives in mesophilic conditions, indicating an optimal growth temperature range that is conducive to its survival and proliferation in temperate waters. The genetic makeup of Photobacterium damselae subsp. damselae includes a single replicon, which suggests a streamlined genomic organization that may facilitate efficient replication and metabolic processes. The genomic data for this strain is cataloged under the accession number ADBS00000000.1, providing a reference point for further genomic studies and comparisons with related species. Ecologically, Photobacterium damselae subsp. damselae is significant due to its association with marine environments, where it may play a role in nutrient cycling and interactions with other marine organisms. The presence of flagella not only aids in mobility but may also influence its interactions with host organisms, potentially positioning it as an important factor in marine microbial communities. Understanding the traits and behaviors of this bacterium can contribute to insights into marine ecology and the dynamics of microbial life in oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainsubsp. damselae CIP 102761

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae subsp. damselae CIP 102761 Contig52, whole

Gene Summary

Adenine Count

1496724 bp

Thymine Count

1497166 bp

Guanine Count

1023938 bp

Cytosine Count

1028473 bp

Genome Length

5046328 bp

Protein-coding Genes

3495 genes

Non-Coding Genes

259 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formate dehydrogenase chain dVDA_000282Not AvailablePositive3249238 - 325006830393.8
[nife] hydrogenase nickel incorporation-associated protein hypbVDA_000283Not AvailablePositive3250424 - 325150040379.4
transporterVDA_000284Not AvailablePositive3251659 - 325226421728.0
hypothetical proteinVDA_000285Not AvailableNegative3252360 - 325322032612.5
upf0061 domain-containing proteinVDA_000286Not AvailableNegative3253302 - 325477756105.6
beta-lactamase carb-3 precursor (carbenicillinase 3)VDA_000287Not AvailablePositive3255209 - 325584123155.7
abc-type fe3+ transport system permease componentVDA_000288Not AvailablePositive3256029 - 325707536693.8
abc transporter atpase subunitVDA_000289Not AvailablePositive3257080 - 325787429925.3
iron(iii) abc transporter solute-binding proteinVDA_000290Not AvailablePositive3257871 - 325889337905.0
hypothetical proteinVDA_000291Not AvailablePositive3259044 - 325942414382.7

Displaying genes 2611 – 2620 of 3754 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00045922-hydroxybutanoateC4H7O3Chemical structure of 2-hydroxybutanoateNot available
Average103.098Da
Monoisotopic103.0400677Da

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.