Parabacteroides sp. D25

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides sp. D25 is a rod-shaped bacterium notable for its possession of flagella, which suggests the capability for motility. This feature may play a significant role in its ecological interactions and adaptations within its environment. The organism has a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival and reproduction. The accession number for Parabacteroides sp. D25 is ACUA00000000.1, which provides a reference for its genomic data in scientific databases. This organism is part of the genus Parabacteroides, which is known for its role in the human gut microbiome, contributing to various metabolic processes and the maintenance of gut health. The presence of flagella can facilitate colonization and movement within the gut environment, potentially enhancing its ability to compete with other microbial species. Additionally, the rod shape of Parabacteroides sp. D25 may confer advantages in nutrient absorption and biofilm formation, both crucial for its persistence in diverse habitats. Overall, the motility and structural characteristics of Parabacteroides sp. D25 suggest it plays a significant role in its ecological niche, likely influencing microbial community dynamics and host interactions. Understanding these traits can provide insights into the broader ecological functions of Parabacteroides species in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. D25
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides sp. D25 cont1.36, whole genome shotgun sequence.

Gene Summary

Adenine Count

1383444 bp

Thymine Count

1449332 bp

Guanine Count

1214827 bp

Cytosine Count

1109504 bp

Genome Length

5157107 bp

Protein-coding Genes

4382 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cof-like hydrolaseHMPREF0999_02324Q5XD45Positive2769959 - 277119144714.0
isochorismate synthaseHMPREF0999_02325P23973Positive2771188 - 277228541669.4
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthaseHMPREF0999_02326A6LB35Positive2772300 - 277398863160.7
naphthoate synthaseHMPREF0999_02327Q99V48Positive2773992 - 277481630529.7
o-succinylbenzoate synthaseHMPREF0999_02328Q6ARP5Positive2774854 - 277591239967.2
hypothetical proteinHMPREF0999_02329Not AvailablePositive2775916 - 277698939622.2
hypothetical proteinHMPREF0999_02330Not AvailablePositive2776992 - 277890871869.0
hypothetical proteinHMPREF0999_02331Not AvailablePositive2778922 - 278050557671.0
hypothetical proteinHMPREF0999_02332Q89ZI2Positive2780607 - 278312095094.5
endonuclease iiiHMPREF0999_02333Q68W04Positive2783262 - 278392725205.8

Displaying genes 2361 – 2370 of 4456 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

200 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 200 metabolites

Health Effects

No health effects information available for this bacterium.