Parabacteroides sp. D25

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides sp. D25 is a rod-shaped bacterium notable for its possession of flagella, which suggests the capability for motility. This feature may play a significant role in its ecological interactions and adaptations within its environment. The organism has a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival and reproduction. The accession number for Parabacteroides sp. D25 is ACUA00000000.1, which provides a reference for its genomic data in scientific databases. This organism is part of the genus Parabacteroides, which is known for its role in the human gut microbiome, contributing to various metabolic processes and the maintenance of gut health. The presence of flagella can facilitate colonization and movement within the gut environment, potentially enhancing its ability to compete with other microbial species. Additionally, the rod shape of Parabacteroides sp. D25 may confer advantages in nutrient absorption and biofilm formation, both crucial for its persistence in diverse habitats. Overall, the motility and structural characteristics of Parabacteroides sp. D25 suggest it plays a significant role in its ecological niche, likely influencing microbial community dynamics and host interactions. Understanding these traits can provide insights into the broader ecological functions of Parabacteroides species in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. D25
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides sp. D25


Gene Summary

Adenine Count

1383444 bp

Thymine Count

1449332 bp

Guanine Count

1214827 bp

Cytosine Count

1109504 bp

Genome Length

5157107 bp

Protein-coding Genes

4382 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHMPREF0999_00004Not AvailableNegative4098 - 559455092.3
czca family heavy metal efflux pumpHMPREF0999_00005Q8XBY1Negative5584 - 9330138729.0
hypothetical proteinHMPREF0999_00006Not AvailableNegative9568 - 995414168.2
hypothetical proteinHMPREF0999_00007Not AvailablePositive10098 - 1138147673.6
hypothetical proteinHMPREF0999_00008A5F0D5Negative11463 - 1307359459.0
hypothetical proteinHMPREF0999_00009Not AvailableNegative13216 - 1419637234.4
mate efflux family proteinHMPREF0999_00010Q9WZS2Positive14323 - 1564549693.7
hypothetical proteinHMPREF0999_00011Not AvailableNegative15650 - 1677443286.6
hypothetical proteinHMPREF0999_00012Not AvailableNegative16831 - 169324044.29
5,10-methylenetetrahydrofolate reductaseHMPREF0999_00013O67422Negative17029 - 1798236040.4

Displaying genes 11 – 20 of 4456 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

200 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 200 metabolites

Health Effects

No health effects information available for this bacterium.