Ruegeria sp. TrichCH4B

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. TrichCH4B is a marine bacterium characterized by possessing a single replicon. This trait is significant as it may influence the organism's genetic stability and adaptability in its marine environment. The strain is cataloged under the accession number ACNZ00000000.1, which provides a reference point for scientific research and genomic studies related to this bacterium. The genus Ruegeria is known for its ecological relevance, particularly in marine ecosystems where it plays a role in nutrient cycling and interactions with other microorganisms. While specific metabolic pathways and ecological interactions for Ruegeria sp. TrichCH4B are not detailed in the provided information, members of the Ruegeria genus are often associated with algal blooms and can contribute to the degradation of organic materials in marine environments. Understanding the genomic traits of Ruegeria sp. TrichCH4B can offer insights into its ecological role and potential applications in biotechnology, such as bioremediation or marine agriculture. The presence of a single replicon may also suggest streamlined genetic processes that could be advantageous for survival in fluctuating marine environments, highlighting the importance of genomic architecture in microbial ecology. Overall, Ruegeria sp. TrichCH4B exemplifies the diverse adaptations of marine bacteria to their habitats, emphasizing the need for further research to elucidate its specific functions in marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. TrichCH4B
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria sp. TrichCH4B


Gene Summary

Adenine Count

957076 bp

Thymine Count

967594 bp

Guanine Count

1397752 bp

Cytosine Count

1348545 bp

Genome Length

4670967 bp

Protein-coding Genes

4249 genes

Non-Coding Genes

131 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail-like protein-Not AvailableNegative2082413 - 2086927161476.0
Hypothetical protein-Not AvailableNegative2086924 - 208733714939.0
Hypothetical protein-Not AvailableNegative2087325 - 208791522343.7
Hypothetical protein-Not AvailableNegative2087918 - 208856823269.9
Tape measure protein-Not AvailableNegative2088568 - 209094385028.9
Hypothetical protein-Not AvailableNegative2090946 - 209122110034.9
hypothetical protein [epibacterium mobile]-Not AvailableNegative2091299 - 209162812175.5
Hypothetical protein-Not AvailableNegative2091644 - 209257633385.9
hypothetical protein [epibacterium mobile]-Not AvailableNegative2092577 - 20927204996.02
Hypothetical protein-Not AvailableNegative2092717 - 209314815695.9

Displaying genes 1 – 10 of 4380 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

297 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 297 metabolites

Health Effects

No health effects information available for this bacterium.