Holdemania filiformis DSM 12042

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemania

Description

Holdemania filiformis DSM 12042 is a Gram-positive anaerobic bacterium. As an anaerobe, it thrives in environments devoid of oxygen, which is a significant trait for its ecological niche. This organism has a single replicon, indicating a streamlined genomic structure that can be advantageous for its survival and reproduction in anaerobic conditions. The strain is cataloged under the accession number ACCF00000000.1, which provides a reference for its genomic data. This data is crucial for researchers interested in the genetic makeup and potential applications of H. filiformis in various fields, such as microbiology, biochemistry, and biotechnology. The anaerobic nature of Holdemania filiformis suggests that it may play a role in specific ecological systems, particularly those involving organic matter degradation in oxygen-poor environments, such as deep-sea sediments or the gastrointestinal tract of animals. Anaerobic bacteria like H. filiformis are essential for nutrient cycling and the breakdown of complex organic materials, contributing to the overall health and stability of their ecosystems. In summary, Holdemania filiformis DSM 12042 is a Gram-positive anaerobic bacterium with a single replicon, highlighting its specialized adaptations to low-oxygen environments and its potential ecological significance in organic matter decomposition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemania
SpeciesHoldemania filiformis
StrainDSM 12042

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemania filiformis DSM 12042 H_filiformis-1.0_Cont138.1, whole

Gene Summary

Adenine Count

954491 bp

Thymine Count

940345 bp

Guanine Count

960613 bp

Cytosine Count

948296 bp

Genome Length

3803745 bp

Protein-coding Genes

4223 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter, substrate-binding protein, family 5HOLDEFILI_00446P24141Positive400303 - 40194960639.9
abc transporter, substrate-binding protein, family 5HOLDEFILI_00447P06202Positive402185 - 40390364315.6
oligopeptide transport system permease protein oppbHOLDEFILI_00448P24138Positive404116 - 40503933464.4
oligopeptide abc transporter, permease protein oppcHOLDEFILI_00449P24139Positive405053 - 40597934065.8
abc transporter, atp-binding proteinHOLDEFILI_00450P26905Positive405993 - 40700037476.5
abc transporter, atp-binding proteinHOLDEFILI_00451C0SP98Positive406997 - 40798636824.9
hypothetical proteinHOLDEFILI_00452Not AvailablePositive408115 - 40877124999.6
hypothetical proteinHOLDEFILI_00453Not AvailablePositive408839 - 40966632425.7
fructose-like phosphotransferase enzyme iib component 2HOLDEFILI_00454P69810Positive409835 - 41020913757.6
phosphotransferase system, eiicHOLDEFILI_00455Q8FFD5Positive410228 - 41131037766.9

Displaying genes 451 – 460 of 4275 in total

Metabolites

465 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 465 metabolites

Health Effects

No health effects information available for this bacterium.