Holdemania filiformis DSM 12042

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Erysipelotrichaceae

Genus

Holdemania

Description

Holdemania filiformis DSM 12042 is a Gram-positive anaerobic bacterium. As an anaerobe, it thrives in environments devoid of oxygen, which is a significant trait for its ecological niche. This organism has a single replicon, indicating a streamlined genomic structure that can be advantageous for its survival and reproduction in anaerobic conditions. The strain is cataloged under the accession number ACCF00000000.1, which provides a reference for its genomic data. This data is crucial for researchers interested in the genetic makeup and potential applications of H. filiformis in various fields, such as microbiology, biochemistry, and biotechnology. The anaerobic nature of Holdemania filiformis suggests that it may play a role in specific ecological systems, particularly those involving organic matter degradation in oxygen-poor environments, such as deep-sea sediments or the gastrointestinal tract of animals. Anaerobic bacteria like H. filiformis are essential for nutrient cycling and the breakdown of complex organic materials, contributing to the overall health and stability of their ecosystems. In summary, Holdemania filiformis DSM 12042 is a Gram-positive anaerobic bacterium with a single replicon, highlighting its specialized adaptations to low-oxygen environments and its potential ecological significance in organic matter decomposition.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyErysipelotrichaceae
GenusHoldemania
SpeciesHoldemania filiformis
StrainDSM 12042

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Holdemania filiformis DSM 12042 H_filiformis-1.0_Cont138.1, whole

Gene Summary

Adenine Count

954491 bp

Thymine Count

940345 bp

Guanine Count

960613 bp

Cytosine Count

948296 bp

Genome Length

3803745 bp

Protein-coding Genes

4223 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHOLDEFILI_00007Not AvailablePositive6466 - 685814457.4
trka n-terminal domain proteinHOLDEFILI_00008Q53949Positive6852 - 731916945.5
trka n-terminal domain proteinHOLDEFILI_00009Q58505Positive7322 - 798724033.6
cation transport proteinHOLDEFILI_00010E1V6C5Positive7984 - 946253173.0
hypothetical proteinHOLDEFILI_00011Not AvailablePositive9633 - 990510577.7
hypothetical proteinHOLDEFILI_00012Not AvailablePositive9902 - 100274697.69
hypothetical proteinHOLDEFILI_00013Not AvailableNegative10015 - 101465092.05
hypothetical proteinHOLDEFILI_00014Q60260Negative10156 - 1156553515.5
hypothetical proteinHOLDEFILI_00015Not AvailableNegative11677 - 1212617467.7
transporter, major facilitator family proteinHOLDEFILI_00016Not AvailableNegative12191 - 1352548234.2

Displaying genes 11 – 20 of 4275 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

465 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 465 metabolites

Health Effects

No health effects information available for this bacterium.