Methanobrevibacter smithii DSM 2375

Gram-positiveRodNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanobacteria

Order

Methanobacteriales

Family

Methanobacteriaceae

Genus

Methanobrevibacter

Description

Methanobrevibacter smithii DSM 2375 is a Gram-positive, rod-shaped archaeon characterized as a lithotroph and an anaerobe. This organism is known to thrive in multiple habitats, primarily within the human gastrointestinal tract, where it plays a crucial role in the digestion of complex carbohydrates. M. smithii typically arranges itself in pairs or chains, reflecting its unique cellular organization. This species has a mesophilic temperature range, with an optimal growth temperature of 37°C, which aligns with the human body temperature, further supporting its ecological niche. M. smithii possesses a single membrane and a single replicon, indicating a relatively simple cellular structure compared to more complex microorganisms. As a free-living organism, M. smithii contributes significantly to the microbial composition of the gut microbiome. Its ability to utilize carbon dioxide and hydrogen to produce methane positions it as a key player in the methanogenic processes that occur in anaerobic environments. This production of methane not only aids in the digestion process but also influences the overall metabolic activity of the gut microbiota. The presence of M. smithii in the human gut is essential for maintaining gut health and metabolic balance, as it helps in the breakdown of indigestible polysaccharides, thus facilitating energy extraction from otherwise inaccessible food sources. Understanding the roles of M. smithii can provide insights into the intricate relationships within the gut microbiome and its impact on human health.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanobacteria
OrderMethanobacteriales
FamilyMethanobacteriaceae
GenusMethanobrevibacter
SpeciesMethanobrevibacter smithii
StrainDSM 2375

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Chains
SporulationNot Available
Energy sourceLithotroph
PathogenicityNot Available

Genome Summary

Methanobrevibacter smithii DSM 2375 M_smithiDSM2375-1.0_Cont56.1,

Gene Summary

Adenine Count

584061 bp

Thymine Count

587532 bp

Guanine Count

263418 bp

Cytosine Count

269854 bp

Genome Length

1704865 bp

Protein-coding Genes

1709 genes

Non-Coding Genes

37 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase family bMETSMIALI_00577Not AvailablePositive558031 - 55871425993.6
had hydrolase, tigr02253 familyMETSMIALI_00578Not AvailablePositive558753 - 55945426161.6
exodeoxyribonuclease iiiMETSMIALI_00579Not AvailableNegative559449 - 56022229502.4
phenylalanine--trna ligase, alpha subunitMETSMIALI_00580Not AvailableNegative560223 - 56176758775.2
triphosphoribosyl-dephospho-coa synthaseMETSMIALI_00581Not AvailableNegative561923 - 56280732517.3
porphobilinogen synthaseMETSMIALI_00582Not AvailableNegative562817 - 56381837318.7
base excision dna repair protein, hhh-gpd familyMETSMIALI_00583Not AvailableNegative563865 - 56457527365.4
chorismate synthaseMETSMIALI_00584Not AvailablePositive564649 - 56574339039.4
hypothetical proteinMETSMIALI_00585Not AvailableNegative565744 - 56666434285.8
hypothetical proteinMETSMIALI_00586Not AvailableNegative566680 - 56760034674.1

Displaying genes 581 – 590 of 1746 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.