Methanobrevibacter smithii DSM 2375

Gram-positiveRodNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanobacteria

Order

Methanobacteriales

Family

Methanobacteriaceae

Genus

Methanobrevibacter

Description

Methanobrevibacter smithii DSM 2375 is a Gram-positive, rod-shaped archaeon characterized as a lithotroph and an anaerobe. This organism is known to thrive in multiple habitats, primarily within the human gastrointestinal tract, where it plays a crucial role in the digestion of complex carbohydrates. M. smithii typically arranges itself in pairs or chains, reflecting its unique cellular organization. This species has a mesophilic temperature range, with an optimal growth temperature of 37°C, which aligns with the human body temperature, further supporting its ecological niche. M. smithii possesses a single membrane and a single replicon, indicating a relatively simple cellular structure compared to more complex microorganisms. As a free-living organism, M. smithii contributes significantly to the microbial composition of the gut microbiome. Its ability to utilize carbon dioxide and hydrogen to produce methane positions it as a key player in the methanogenic processes that occur in anaerobic environments. This production of methane not only aids in the digestion process but also influences the overall metabolic activity of the gut microbiota. The presence of M. smithii in the human gut is essential for maintaining gut health and metabolic balance, as it helps in the breakdown of indigestible polysaccharides, thus facilitating energy extraction from otherwise inaccessible food sources. Understanding the roles of M. smithii can provide insights into the intricate relationships within the gut microbiome and its impact on human health.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanobacteria
OrderMethanobacteriales
FamilyMethanobacteriaceae
GenusMethanobrevibacter
SpeciesMethanobrevibacter smithii
StrainDSM 2375

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Chains
SporulationNot Available
Energy sourceLithotroph
PathogenicityNot Available

Genome Summary

Methanobrevibacter smithii DSM 2375 M_smithiDSM2375-1.0_Cont56.1,

Gene Summary

Adenine Count

584061 bp

Thymine Count

587532 bp

Guanine Count

263418 bp

Cytosine Count

269854 bp

Genome Length

1704865 bp

Protein-coding Genes

1709 genes

Non-Coding Genes

37 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative exosome complex rna-binding protein csl4METSMIALI_01300Not AvailableNegative1285935 - 128650720935.3
arcog04112 universal archaeal diphthamide biosynthesis domain proteinMETSMIALI_01301Not AvailableNegative1286576 - 128759238598.2
phosphoribosyl transferase domain proteinMETSMIALI_01302Not AvailableNegative1287582 - 128815120697.4
signal peptide binding domain proteinMETSMIALI_01303Not AvailablePositive1288255 - 128959849670.9
tigr01213 family proteinMETSMIALI_01304Not AvailablePositive1289595 - 129080946662.3
molybdenum cofactor biosynthesis protein cMETSMIALI_01305Not AvailablePositive1290799 - 129128717777.7
putative preprotein translocase subunit secgMETSMIALI_01306Not AvailablePositive1291357 - 12915185870.28
imidazoleglycerol phosphate synthase, cyclase subunitMETSMIALI_01307Not AvailablePositive1291584 - 129240829873.6
8-oxoguanine dna-glycosylase (ogg)METSMIALI_01308Not AvailablePositive1292405 - 129334035950.9
glyoxalase family proteinMETSMIALI_01309Not AvailablePositive1293345 - 129370113303.0

Displaying genes 1301 – 1310 of 1746 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.