Phocaeicola dorei DSM 17855

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei DSM 17855 is a Gram-negative, non-motile rod-shaped bacterium classified as a chemoheterotroph and an anaerobe. This species is characterized by its inability to form spores and has a single replicon. It thrives optimally at a temperature of 37°C, indicating mesophilic growth conditions. Phocaeicola dorei has been identified in various habitats, suggesting its adaptability to different environments. The presence of flagella, despite the lack of mobility, may play a role in the organism's interaction with its surroundings or in biofilm formation. The ecological significance of Phocaeicola dorei lies in its role within anaerobic conditions, where it may contribute to the breakdown of organic matter and nutrient cycling. Its chemoheterotrophic nature indicates that it relies on organic compounds for energy, which may make it a key player in the microbiomes of various ecosystems, particularly those that are anaerobic. Understanding the characteristics and behaviors of Phocaeicola dorei can provide insights into its function and interactions in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainDSM 17855

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei DSM 17855
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei DSM 17855 B_dorei-1.0_Cont206.1, whole genome

Gene Summary

Adenine Count

1561819 bp

Thymine Count

1621837 bp

Guanine Count

1209139 bp

Cytosine Count

1094938 bp

Genome Length

5487768 bp

Protein-coding Genes

4961 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiazole biosynthesis protein thihBACDOR_02479Not AvailableNegative2745393 - 274652343495.2
flavin reductaseBACDOR_02480Not AvailableNegative2746615 - 274718721450.7
hypothetical proteinBACDOR_02481Not AvailableNegative2747184 - 274770219634.0
thiamine biosynthesis protein thicBACDOR_02482Not AvailableNegative2747724 - 274942463459.7
thiazole biosynthesis protein thigBACDOR_02483Not AvailableNegative2749433 - 275020627547.5
thiamine-phosphate diphosphorylaseBACDOR_02484Not AvailableNegative2750224 - 275085023084.9
thiamine biosynthesis protein thisBACDOR_02485Not AvailableNegative2750840 - 27510407169.82
hypothetical proteinBACDOR_02486Not AvailablePositive2751186 - 27513265517.87
superoxide dismutase, mn/fe familyBACDOR_02487Not AvailableNegative2751428 - 275200921976.8
uvrd/rep helicaseBACDOR_02488Not AvailablePositive2752154 - 275454491413.7

Displaying genes 2501 – 2510 of 5041 in total

Metabolites

37 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00033532-dehydro-3-deoxy-6-phospho-D-galactonateC6H8O9PChemical structure of 2-dehydro-3-deoxy-6-phospho-D-galactonate32120-43-7
Average255.0961Da
Monoisotopic254.9905934Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003448(4,5-dihydro-5-oxofuran-2-yl)-acetateC6H5O4Chemical structure of (4,5-dihydro-5-oxofuran-2-yl)-acetateNot available
Average141.103Da
Monoisotopic141.0193322Da
BASm0003671(S)-muconolactoneC6H5O4Chemical structure of (S)-muconolactoneNot available
Average141.103Da
Monoisotopic141.0193322Da

Displaying 1–10 of 37 metabolites

Health Effects

No health effects information available for this bacterium.