Phocaeicola dorei DSM 17855

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei DSM 17855 is a Gram-negative, non-motile rod-shaped bacterium classified as a chemoheterotroph and an anaerobe. This species is characterized by its inability to form spores and has a single replicon. It thrives optimally at a temperature of 37°C, indicating mesophilic growth conditions. Phocaeicola dorei has been identified in various habitats, suggesting its adaptability to different environments. The presence of flagella, despite the lack of mobility, may play a role in the organism's interaction with its surroundings or in biofilm formation. The ecological significance of Phocaeicola dorei lies in its role within anaerobic conditions, where it may contribute to the breakdown of organic matter and nutrient cycling. Its chemoheterotrophic nature indicates that it relies on organic compounds for energy, which may make it a key player in the microbiomes of various ecosystems, particularly those that are anaerobic. Understanding the characteristics and behaviors of Phocaeicola dorei can provide insights into its function and interactions in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainDSM 17855

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei DSM 17855
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei DSM 17855 B_dorei-1.0_Cont206.1, whole genome

Gene Summary

Adenine Count

1561819 bp

Thymine Count

1621837 bp

Guanine Count

1209139 bp

Cytosine Count

1094938 bp

Genome Length

5487768 bp

Protein-coding Genes

4961 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma factor regulatory protein, fecr/pupr familyBACDOR_01139Not AvailablePositive1273611 - 127460337909.4
putative alpha-1,2-mannosidaseBACDOR_01140Not AvailablePositive1274621 - 127690386348.6
putative alpha-1,2-mannosidaseBACDOR_01141Not AvailablePositive1276934 - 127924687868.8
hypothetical proteinBACDOR_01142Not AvailablePositive1279257 - 12795089922.02
tonb-linked outer membrane protein, susc/raga familyBACDOR_01143Not AvailablePositive1279535 - 1282936125021.0
hypothetical proteinBACDOR_01144Not AvailablePositive1282960 - 128472966848.8
endonuclease/exonuclease/phosphatase family proteinBACDOR_01145Not AvailablePositive1284773 - 128561831962.9
hypothetical proteinBACDOR_01146Not AvailableNegative1285680 - 128602113035.9
hypothetical proteinBACDOR_01147Not AvailableNegative1285990 - 128678130746.7
hypothetical proteinBACDOR_01148Not AvailablePositive1286942 - 128895775762.0

Displaying genes 1161 – 1170 of 5041 in total

Metabolites

37 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00033532-dehydro-3-deoxy-6-phospho-D-galactonateC6H8O9PChemical structure of 2-dehydro-3-deoxy-6-phospho-D-galactonate32120-43-7
Average255.0961Da
Monoisotopic254.9905934Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003448(4,5-dihydro-5-oxofuran-2-yl)-acetateC6H5O4Chemical structure of (4,5-dihydro-5-oxofuran-2-yl)-acetateNot available
Average141.103Da
Monoisotopic141.0193322Da
BASm0003671(S)-muconolactoneC6H5O4Chemical structure of (S)-muconolactoneNot available
Average141.103Da
Monoisotopic141.0193322Da

Displaying 1–10 of 37 metabolites

Health Effects

No health effects information available for this bacterium.