Phocaeicola coprocola DSM 17136

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprocola DSM 17136 is a Gram-negative, anaerobic bacterium characterized by its rod shape and the presence of flagella. This bacterium has a single replicon, which indicates a streamlined genetic organization. The strain is cataloged under the accession number ABIY00000000.2, which provides a reference for its genomic data. As an anaerobe, Phocaeicola coprocola thrives in environments devoid of oxygen, suggesting its ecological niche may be within the gastrointestinal tracts of various hosts or in other anoxic environments. The flagella present in this bacterium likely contribute to its motility, enabling it to navigate its habitat effectively. The ecological role of Phocaeicola coprocola may be significant in the context of gut microbiota, where anaerobic bacteria often play crucial roles in digestion and nutrient absorption. Its ability to survive and proliferate in environments with limited oxygen could position it as an important player in the degradation of organic matter and the fermentation processes that occur within anaerobic ecosystems. Understanding the specific functions and interactions of Phocaeicola coprocola within its ecosystem could provide insights into the dynamics of microbial communities and their contributions to host health and environmental stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainDSM 17136

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola coprocola DSM 17136
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola DSM 17136 B_coprocola-2.0.1_Cont962, whole

Gene Summary

Adenine Count

1246873 bp

Thymine Count

1250211 bp

Guanine Count

898938 bp

Cytosine Count

899595 bp

Genome Length

4295617 bp

Protein-coding Genes

4284 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBACCOP_03330Not AvailableNegative3204255 - 32043865082.34
leua allosteric (dimerization) domain proteinBACCOP_03331Not AvailableNegative3204484 - 320602857433.9
3-isopropylmalate dehydratase, small subunitBACCOP_03332Not AvailableNegative3206042 - 320663822484.5
3-isopropylmalate dehydratase, large subunitBACCOP_03333Not AvailableNegative3206660 - 320805750723.9
2-isopropylmalate synthaseBACCOP_03334Not AvailableNegative3208076 - 320957254566.1
nicotinate phosphoribosyltransferaseBACCOP_03335Not AvailableNegative3209854 - 321102045535.2
alpha-l-fucosidaseBACCOP_03336Not AvailableNegative3211079 - 321240149760.1
Trna-alaNot AvailableNot AvailablePositive3215703 - 3215779Not Available
Trna-ileNot AvailableNot AvailablePositive3215859 - 3215935Not Available
hypothetical proteinBACCOP_03342Not AvailablePositive3217725 - 321826421219.7

Displaying genes 3341 – 3350 of 4400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.