Phocaeicola coprocola DSM 17136

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprocola DSM 17136 is a Gram-negative, anaerobic bacterium characterized by its rod shape and the presence of flagella. This bacterium has a single replicon, which indicates a streamlined genetic organization. The strain is cataloged under the accession number ABIY00000000.2, which provides a reference for its genomic data. As an anaerobe, Phocaeicola coprocola thrives in environments devoid of oxygen, suggesting its ecological niche may be within the gastrointestinal tracts of various hosts or in other anoxic environments. The flagella present in this bacterium likely contribute to its motility, enabling it to navigate its habitat effectively. The ecological role of Phocaeicola coprocola may be significant in the context of gut microbiota, where anaerobic bacteria often play crucial roles in digestion and nutrient absorption. Its ability to survive and proliferate in environments with limited oxygen could position it as an important player in the degradation of organic matter and the fermentation processes that occur within anaerobic ecosystems. Understanding the specific functions and interactions of Phocaeicola coprocola within its ecosystem could provide insights into the dynamics of microbial communities and their contributions to host health and environmental stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainDSM 17136

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola coprocola DSM 17136
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola DSM 17136 B_coprocola-2.0.1_Cont962, whole

Gene Summary

Adenine Count

1246873 bp

Thymine Count

1250211 bp

Guanine Count

898938 bp

Cytosine Count

899595 bp

Genome Length

4295617 bp

Protein-coding Genes

4284 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazole glycerol phosphate synthase, glutamine amidotransferase subunitBACCOP_03150Not AvailablePositive3022865 - 302345522508.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseBACCOP_03151Not AvailablePositive3023486 - 302420526390.8
imidazoleglycerol phosphate synthase, cyclase subunitBACCOP_03152Not AvailablePositive3024225 - 302498027017.1
phosphoribosyl-atp diphosphataseBACCOP_03153Not AvailablePositive3024999 - 302561023243.7
abc transporter, atp-binding proteinBACCOP_03154Not AvailablePositive3025615 - 302629525669.1
amino acid kinase familyBACCOP_03155Not AvailablePositive3026412 - 302773149095.0
diaminopimelate decarboxylaseBACCOP_03156Not AvailablePositive3027807 - 302896742729.3
valine--trna ligaseBACCOP_03157Not AvailablePositive3029199 - 3031841100954.0
hypothetical proteinBACCOP_03159Not AvailableNegative3031913 - 30320354665.03
hypothetical proteinBACCOP_03158Not AvailablePositive3032034 - 303233010946.1

Displaying genes 3161 – 3170 of 4400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.