Phocaeicola coprocola DSM 17136

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprocola DSM 17136 is a Gram-negative, anaerobic bacterium characterized by its rod shape and the presence of flagella. This bacterium has a single replicon, which indicates a streamlined genetic organization. The strain is cataloged under the accession number ABIY00000000.2, which provides a reference for its genomic data. As an anaerobe, Phocaeicola coprocola thrives in environments devoid of oxygen, suggesting its ecological niche may be within the gastrointestinal tracts of various hosts or in other anoxic environments. The flagella present in this bacterium likely contribute to its motility, enabling it to navigate its habitat effectively. The ecological role of Phocaeicola coprocola may be significant in the context of gut microbiota, where anaerobic bacteria often play crucial roles in digestion and nutrient absorption. Its ability to survive and proliferate in environments with limited oxygen could position it as an important player in the degradation of organic matter and the fermentation processes that occur within anaerobic ecosystems. Understanding the specific functions and interactions of Phocaeicola coprocola within its ecosystem could provide insights into the dynamics of microbial communities and their contributions to host health and environmental stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainDSM 17136

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola coprocola DSM 17136
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola DSM 17136 B_coprocola-2.0.1_Cont962, whole

Gene Summary

Adenine Count

1246873 bp

Thymine Count

1250211 bp

Guanine Count

898938 bp

Cytosine Count

899595 bp

Genome Length

4295617 bp

Protein-coding Genes

4284 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is66 family element, transposaseBACCOP_02818Not AvailableNegative2718710 - 272041665522.4
Trna-glyNot AvailableNot AvailablePositive2720427 - 2720499Not Available
Trna-tyrNot AvailableNot AvailablePositive2720505 - 2720590Not Available
6,7-dimethyl-8-ribityllumazine synthaseBACCOP_02821Not AvailableNegative2720642 - 272113617535.1
tetratricopeptide repeat proteinBACCOP_02822Not AvailableNegative2721291 - 272196824475.2
dna replication and repair protein recfBACCOP_02823Not AvailablePositive2722132 - 272325343231.8
hypothetical proteinBACCOP_02824Not AvailablePositive2723250 - 272354011212.8
5-formyltetrahydrofolate cyclo-ligaseBACCOP_02825Not AvailableNegative2723570 - 272413021820.2
peptidase, s41 familyBACCOP_02826Not AvailableNegative2724354 - 272599460852.1
cytidine and deoxycytidylate deaminase zinc-binding regionBACCOP_02827Not AvailableNegative2726000 - 272643416203.5

Displaying genes 2831 – 2840 of 4400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.