Phocaeicola coprocola DSM 17136

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprocola DSM 17136 is a Gram-negative, anaerobic bacterium characterized by its rod shape and the presence of flagella. This bacterium has a single replicon, which indicates a streamlined genetic organization. The strain is cataloged under the accession number ABIY00000000.2, which provides a reference for its genomic data. As an anaerobe, Phocaeicola coprocola thrives in environments devoid of oxygen, suggesting its ecological niche may be within the gastrointestinal tracts of various hosts or in other anoxic environments. The flagella present in this bacterium likely contribute to its motility, enabling it to navigate its habitat effectively. The ecological role of Phocaeicola coprocola may be significant in the context of gut microbiota, where anaerobic bacteria often play crucial roles in digestion and nutrient absorption. Its ability to survive and proliferate in environments with limited oxygen could position it as an important player in the degradation of organic matter and the fermentation processes that occur within anaerobic ecosystems. Understanding the specific functions and interactions of Phocaeicola coprocola within its ecosystem could provide insights into the dynamics of microbial communities and their contributions to host health and environmental stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainDSM 17136

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola coprocola DSM 17136
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola DSM 17136 B_coprocola-2.0.1_Cont962, whole

Gene Summary

Adenine Count

1246873 bp

Thymine Count

1250211 bp

Guanine Count

898938 bp

Cytosine Count

899595 bp

Genome Length

4295617 bp

Protein-coding Genes

4284 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosomal protein s5BACCOP_01348Not AvailablePositive1284182 - 128469717839.8
ribosomal protein l30BACCOP_01349Not AvailablePositive1284709 - 12848856475.22
ribosomal protein l15BACCOP_01350Not AvailablePositive1284916 - 128536215643.9
preprotein translocase, secy subunitBACCOP_01351Not AvailablePositive1285367 - 128671349102.4
methionine aminopeptidase, type iBACCOP_01352Not AvailablePositive1286725 - 128752229258.2
translation initiation factor if-1BACCOP_01353Not AvailablePositive1287524 - 12877428235.14
30s ribosomal protein s13BACCOP_01354Not AvailablePositive1287906 - 128828614149.3
30s ribosomal protein s11BACCOP_01355Not AvailablePositive1288298 - 128868713894.8
ribosomal protein s4BACCOP_01356Not AvailablePositive1288808 - 128941322653.4
dna-directed rna polymerase, alpha subunitBACCOP_01357Not AvailablePositive1289425 - 129041737487.0

Displaying genes 1361 – 1370 of 4400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.