Thomasclavelia ramosa DSM 1402

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Erysipelotrichia

Order

Erysipelotrichales

Family

Coprobacillaceae

Genus

Thomasclavelia

Description

Thomasclavelia ramosa DSM 1402 is a Gram-positive, anaerobic, chemoheterotrophic bacterium characterized by its rod-shaped morphology. This species is non-motile, despite the presence of flagella, indicating that it does not use them for movement. T. ramosa is classified as mesophilic, with an optimal growth temperature of 37°C, which is typical for many pathogenic and symbiotic microorganisms that thrive in moderate temperature environments. The organism is known to be sporulating, which suggests that it has the ability to form spores as a survival strategy under unfavorable conditions. This trait is significant for its ecological resilience and ability to endure environmental stresses. T. ramosa has a single replicon, indicating a relatively simple genomic organization. The accession number for this strain is ABFX00000000.2, providing a reference point for genetic and biochemical studies. The ecological insight drawn from these traits suggests that Thomasclavelia ramosa may play a role in anaerobic environments where organic matter decomposition occurs, potentially contributing to nutrient cycling. Its ability to sporulate and thrive in a stable temperature range may allow it to occupy niches in various habitats, including soil and the gastrointestinal tracts of animals, where it could influence microbial community dynamics and host interactions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassErysipelotrichia
OrderErysipelotrichales
FamilyCoprobacillaceae
GenusThomasclavelia
SpeciesThomasclavelia ramosa
StrainDSM 1402

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Thomasclavelia ramosa DSM 1402
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Thomasclavelia ramosa DSM 1402 C_ramosum-2.0.1_Cont178, whole

Gene Summary

Adenine Count

1118441 bp

Thymine Count

1101065 bp

Guanine Count

533932 bp

Cytosine Count

481357 bp

Genome Length

3234795 bp

Protein-coding Genes

3140 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
recombination factor protein raraCLORAM_00008O34528Positive7228 - 846946173.4
thiamine biosynthesis protein thicCLORAM_00009B9E2H5Positive8683 - 999048456.7
dna-binding helix-turn-helix proteinCLORAM_00010Not AvailableNegative10017 - 1074525986.0
trna dimethylallyltransferaseCLORAM_00011B7GIA2Negative10857 - 1176835073.9
dna mismatch repair domain proteinCLORAM_00012B7GIA3Negative11768 - 1360969984.0
dna mismatch repair protein mutsCLORAM_00013Q65JE2Negative13610 - 1612094969.5
spore coat protein eCLORAM_00014P14016Negative16196 - 1669018893.6
inosine 5-monophosphate dehydrogenaseCLORAM_00015P50097Negative16760 - 1827455051.2
hypothetical proteinCLORAM_00016Not AvailableNegative18350 - 1868813424.2
pp_00014CLORAM_00017Not AvailableNegative18669 - 20114Not Available

Displaying genes 71 – 80 of 3222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

136 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00009123-(indol-3-yl)lactateC11H10NO3Chemical structure of 3-(indol-3-yl)lactateNot available
Average204.206Da
Monoisotopic204.0666168Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 136 metabolites

Health Effects

No health effects information available for this bacterium.