Stigmatella aurantiaca DW4/3-1 gsam_325

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Myxococcia

Order

Myxococcales

Family

Archangiaceae

Genus

Stigmatella

Description

Stigmatella aurantiaca DW4/3-1 is a myxobacterium known for its complex life cycle and social behavior, which are characteristic of the Myxobacteria class. This organism has a single replicon, indicating a streamlined genetic architecture that may contribute to its adaptability and efficiency in nutrient-rich environments. The genetic information of Stigmatella aurantiaca DW4/3-1 is cataloged under the accession number AAMD00000000.1, which provides a reference for researchers interested in studying its genomic features and potential applications. This bacterium is notable for its ability to undergo multicellular development, forming fruiting bodies under conditions of starvation. Such development is a fascinating aspect of its biology, as it highlights the organism's capacity for social interaction and cooperation among cells. The formation of these structures allows for the dispersal of spores, which is critical for survival in fluctuating environments. Ecologically, Stigmatella aurantiaca DW4/3-1 plays a significant role in nutrient cycling within its habitat, contributing to the degradation of organic matter. Its unique life cycle and developmental strategies suggest that it may be well adapted to exploit temporary resources, making it an important player in ecosystems where organic material is abundant but ephemeral. This adaptability underscores the ecological significance of myxobacteria in shaping microbial communities and their functions in the environment.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyArchangiaceae
GenusStigmatella
SpeciesStigmatella aurantiaca
StrainDW4/3-1 gsam_325

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stigmatella aurantiaca DW4/3-1 gsam_325, whole genome shotgun

Gene Summary

Adenine Count

1676389 bp

Thymine Count

1667136 bp

Guanine Count

3455199 bp

Cytosine Count

3466072 bp

Genome Length

10265408 bp

Protein-coding Genes

8543 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alternative cytochrome c oxidase polypeptide i (cytochrome bb3 subunit 1) (oxidase bb(3) subunit 1)STIAU_2657Not AvailableNegative3697358 - 369886053595.3
cytochrome c oxidase subunit iiSTIAU_2658Not AvailableNegative3699061 - 370010137093.9
sco1/senc superfamilySTIAU_2659Not AvailablePositive3700362 - 370091020181.9
hypothetical proteinSTIAU_2660Not AvailableNegative3700929 - 370180731536.6
prolyl oligopeptidase family proteinSTIAU_2661Not AvailablePositive3702122 - 370416775022.1
isjp4 transposaseSTIAU_2662Not AvailableNegative3704199 - 370450411588.9
pyruvate dehydrogenase complex repressorSTIAU_2663Not AvailablePositive3704579 - 37048549844.83
transposaseSTIAU_2664Not AvailablePositive3705062 - 370631246694.5
proline-rich protein mp-3STIAU_2665Not AvailablePositive3706587 - 370731525693.4
isrso13-transposase proteinSTIAU_2666Not AvailablePositive3707501 - 370870043989.0

Displaying genes 3001 – 3010 of 8592 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19910 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000025(4R,7R)-4-isopropenyl-7-methyloxepan-2-oneC10H16O2Chemical structure of (4R,7R)-4-isopropenyl-7-methyloxepan-2-oneNot available
Average168.236Da
Monoisotopic168.1150298Da
BASm0000098D-cellotrioseC18H32O16Chemical structure of D-cellotrioseNot available
Average504.4371Da
Monoisotopic504.169035Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000247(2R,3S,4S)-leucocyanidinC15H14O7Chemical structure of (2R,3S,4S)-leucocyanidin480-17-1
Average306.2675Da
Monoisotopic306.073952802Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da

Displaying 1–10 of 19910 metabolites

Health Effects

No health effects information available for this bacterium.