[Phormidium ambiguum] IAM M-71

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Aerosakkonematales

Family

Aerosakkonemataceae

Genus

Floridanema

Description

Phormidium ambiguum IAM M-71 is characterized by having a single replicon, indicating a streamlined genetic structure. Its accession number is MRCE00000000.1, which provides a reference point for researchers seeking to access its genomic data and further study its characteristics. As a member of the cyanobacteria group, P. ambiguum is notable for its potential ecological roles, particularly in aquatic environments. Cyanobacteria, including Phormidium species, are known for their ability to perform photosynthesis, contributing to primary production and influencing nutrient cycles in their habitats. This trait allows them to thrive in various environments, often forming mats that can stabilize sediments and provide habitat for other microorganisms. Understanding the genomic and ecological traits of Phormidium ambiguum IAM M-71 can provide insights into its adaptability and potential applications in biotechnology, such as in bioremediation or as a biofertilizer. The presence of a single replicon suggests that it may have a compact genome, potentially allowing for efficient regulation of metabolic pathways, which can be advantageous in fluctuating environmental conditions. In summary, Phormidium ambiguum IAM M-71, with its single replicon and defined genomic reference, highlights the importance of cyanobacteria in ecological systems, particularly in their roles in primary production and sediment stabilization. Further research into its specific traits and functions could enhance our understanding of its contributions to ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderAerosakkonematales
FamilyAerosakkonemataceae
GenusFloridanema
Species[Phormidium ambiguum] IAM M-71
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_90, whole genome

Gene Summary

Adenine Count

2248017 bp

Thymine Count

2233233 bp

Guanine Count

1460328 bp

Cytosine Count

1468857 bp

Genome Length

7410502 bp

Protein-coding Genes

6139 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent clp endopeptidase, proteolytic subunit clppNIES2119_00285Not AvailableNegative73381 - 7402523833.8
trigger factorNIES2119_00290Not AvailableNegative74424 - 7582151903.3
aspartate-semialdehyde dehydrogenaseNIES2119_00295Not AvailablePositive76453 - 7751738278.0
4-hydroxy-tetrahydrodipicolinate synthaseNIES2119_00300Not AvailablePositive77564 - 7844831420.9
ribonuclease jNIES2119_00305Not AvailablePositive78658 - 8042765169.0
nitrogenaseNIES2119_00310Not AvailablePositive80854 - 8122514433.3
hypothetical proteinNIES2119_00315Not AvailablePositive82047 - 8282029699.9
hypothetical proteinNIES2119_00320Not AvailablePositive83039 - 832939656.6
murein transglycosylaseNIES2119_00325Not AvailablePositive83297 - 8447243563.5
hypothetical proteinNIES2119_00330Not AvailablePositive84609 - 8536729088.1

Displaying genes 71 – 80 of 6221 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.