[Phormidium ambiguum] IAM M-71

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Aerosakkonematales

Family

Aerosakkonemataceae

Genus

Floridanema

Description

Phormidium ambiguum IAM M-71 is characterized by having a single replicon, indicating a streamlined genetic structure. Its accession number is MRCE00000000.1, which provides a reference point for researchers seeking to access its genomic data and further study its characteristics. As a member of the cyanobacteria group, P. ambiguum is notable for its potential ecological roles, particularly in aquatic environments. Cyanobacteria, including Phormidium species, are known for their ability to perform photosynthesis, contributing to primary production and influencing nutrient cycles in their habitats. This trait allows them to thrive in various environments, often forming mats that can stabilize sediments and provide habitat for other microorganisms. Understanding the genomic and ecological traits of Phormidium ambiguum IAM M-71 can provide insights into its adaptability and potential applications in biotechnology, such as in bioremediation or as a biofertilizer. The presence of a single replicon suggests that it may have a compact genome, potentially allowing for efficient regulation of metabolic pathways, which can be advantageous in fluctuating environmental conditions. In summary, Phormidium ambiguum IAM M-71, with its single replicon and defined genomic reference, highlights the importance of cyanobacteria in ecological systems, particularly in their roles in primary production and sediment stabilization. Further research into its specific traits and functions could enhance our understanding of its contributions to ecosystem dynamics.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderAerosakkonematales
FamilyAerosakkonemataceae
GenusFloridanema
Species[Phormidium ambiguum] IAM M-71
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_90, whole genome

Gene Summary

Adenine Count

2248017 bp

Thymine Count

2233233 bp

Guanine Count

1460328 bp

Cytosine Count

1468857 bp

Genome Length

7410502 bp

Protein-coding Genes

6139 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated protein csx3NIES2119_19405Not AvailablePositive4432621 - 443353833879.9
crispr-associated protein csx3NIES2119_19410Not AvailablePositive4433790 - 443411911880.4
type iii-a crispr-associated protein cas10/csm1NIES2119_19415Not AvailablePositive4434172 - 443653890917.1
type iii-a crispr-associated protein csm2NIES2119_19420Not AvailablePositive4436655 - 443709516530.1
type iii-a crispr-associated ramp protein csm3NIES2119_19425Not AvailablePositive4437098 - 443803934529.9
type iii-a crispr-associated ramp protein csm4NIES2119_19430Not AvailablePositive4438048 - 443912740856.2
type iii-a crispr-associated ramp protein csm5NIES2119_19435Not AvailablePositive4439157 - 444044650183.9
crispr-associated protein cas6NIES2119_19440Not AvailablePositive4440449 - 444121028475.4
crispr-associated proteinNIES2119_19445Not AvailablePositive4441228 - 444251448597.4
hypothetical proteinNIES2119_19450Not AvailablePositive4442504 - 444312723489.6

Displaying genes 3811 – 3820 of 6221 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.