Peptidiphaga gingivicola

Coccus

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Peptidiphaga

Description

Peptidiphaga gingivicola is a Gram-positive coccus that resides primarily in the subgingival plaque of Homo sapiens. This bacterium is characterized by a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in the oral environment. The presence of P. gingivicola in subgingival plaque highlights its potential role in oral health and disease, particularly in relation to periodontal conditions. Subgingival plaque is a complex biofilm that harbors various microbial species, and the interactions among these microbes can influence periodontal health. Understanding the specific traits and behaviors of P. gingivicola within this niche can provide insights into its ecological role. Given that P. gingivicola is associated with the human oral cavity, it may participate in the intricate balance of microbial communities that are critical for maintaining oral health. However, the implications of its presence in relation to periodontal disease remain an area of interest for further research. The accession number LVZK00000000.1 serves as a reference for genomic studies of this organism, facilitating future investigations into its genetic makeup and potential functions within the biofilm environment. Overall, the study of Peptidiphaga gingivicola underscores the importance of specific bacterial species in the complex ecosystem of the human oral cavity, particularly in contexts related to oral health and disease.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusPeptidiphaga
SpeciesPeptidiphaga gingivicola
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCoccus
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsubgingival plaque
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Peptidiphaga gingivicola strain BA112 Peptido_ging_BA112_ctg3,

Gene Summary

Adenine Count

450734 bp

Thymine Count

447477 bp

Guanine Count

810550 bp

Cytosine Count

816064 bp

Genome Length

2524828 bp

Protein-coding Genes

1994 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein in recf-gyrb intergenic regionA4H34_02015Not AvailablePositive497334 - 49795122429.2
dna topoisomerase iv subunit bA4H34_02020Not AvailablePositive498137 - 50020076420.9
dna gyrase subunit aA4H34_02025Not AvailablePositive500213 - 50280194852.5
hypothetical proteinA4H34_02030Not AvailablePositive502979 - 50332012402.8
Trna-ileNot AvailableNot AvailablePositive503496 - 503569Not Available
Trna-alaNot AvailableNot AvailablePositive503750 - 503822Not Available
acetyltransferaseA4H34_02045Not AvailableNegative504153 - 50459916389.1
hypothetical proteinA4H34_02050Not AvailablePositive505188 - 508853127602.0
hypothetical proteinA4H34_02055Not AvailableNegative509137 - 50986526326.9
hypothetical proteinA4H34_02060Not AvailableNegative510201 - 51092625625.9

Displaying genes 401 – 410 of 2053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.