Oceanicola sp. D3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Oceanicola

Description

Oceanicola sp. D3 is characterized by having a single replicon, which is significant in understanding its genomic organization and stability. The strain has been cataloged under the accession number NZ_CP040932.1, indicating its availability for further study and reference within scientific databases. The presence of a single replicon suggests a streamlined genomic structure, which may contribute to the organism's adaptability and efficiency in its marine environment. This trait can be particularly advantageous for survival in various ecological niches, as it may facilitate rapid responses to environmental changes. In the context of marine microbiology, Oceanicola sp. D3 can be considered a representative of its genus, which is known for its involvement in biogeochemical processes in oceanic systems. While specific metabolic capabilities or ecological roles are not detailed here, the organism’s genomic simplicity may imply specialized functions in nutrient cycling or interactions with other marine microorganisms. The study of Oceanicola sp. D3, through its genomic insights provided by the accession number, contributes to our understanding of microbial diversity in oceanic environments. This organism's attributes may reflect broader ecological dynamics, including adaptability and resilience in the face of changing oceanic conditions, underscoring the importance of marine microorganisms in sustaining marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusOceanicola
SpeciesOceanicola sp. D3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicola sp. D3 chromosome, complete genome.

Gene Summary

Adenine Count

722342 bp

Thymine Count

717828 bp

Guanine Count

1299888 bp

Cytosine Count

1313554 bp

Genome Length

4053612 bp

Protein-coding Genes

4057 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf983 domain-containing proteinFHY55_RS15120Not AvailableNegative3025180 - 302552412569.7
ef-hand domain-containing proteinFHY55_RS15125Not AvailablePositive3025877 - 302648221573.1
rna polymerase sigma factorFHY55_RS15130Not AvailablePositive3026587 - 302717121354.8
hypothetical proteinFHY55_RS15135Not AvailablePositive3027164 - 302758914278.7
periplasmic heavy metal sensorFHY55_RS15140Not AvailablePositive3027599 - 302813519585.6
dna primaseFHY55_RS15145Not AvailablePositive3028206 - 303018572179.9
rna polymerase sigma factor rpodFHY55_RS15150Not AvailablePositive3030340 - 303234375997.9
type ii toxin-antitoxin system phd/yefm family antitoxinFHY55_RS15155Not AvailablePositive3033136 - 30334089828.81
txe/yoeb family addiction module toxinFHY55_RS15160Not AvailablePositive3033405 - 30336629903.78
yigz family proteinFHY55_RS15165Not AvailablePositive3033666 - 303402213072.9

Displaying genes 3051 – 3060 of 4121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.