Oceanicola sp. D3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Oceanicola

Description

Oceanicola sp. D3 is characterized by having a single replicon, which is significant in understanding its genomic organization and stability. The strain has been cataloged under the accession number NZ_CP040932.1, indicating its availability for further study and reference within scientific databases. The presence of a single replicon suggests a streamlined genomic structure, which may contribute to the organism's adaptability and efficiency in its marine environment. This trait can be particularly advantageous for survival in various ecological niches, as it may facilitate rapid responses to environmental changes. In the context of marine microbiology, Oceanicola sp. D3 can be considered a representative of its genus, which is known for its involvement in biogeochemical processes in oceanic systems. While specific metabolic capabilities or ecological roles are not detailed here, the organism’s genomic simplicity may imply specialized functions in nutrient cycling or interactions with other marine microorganisms. The study of Oceanicola sp. D3, through its genomic insights provided by the accession number, contributes to our understanding of microbial diversity in oceanic environments. This organism's attributes may reflect broader ecological dynamics, including adaptability and resilience in the face of changing oceanic conditions, underscoring the importance of marine microorganisms in sustaining marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusOceanicola
SpeciesOceanicola sp. D3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicola sp. D3 chromosome, complete genome.

Gene Summary

Adenine Count

722342 bp

Thymine Count

717828 bp

Guanine Count

1299888 bp

Cytosine Count

1313554 bp

Genome Length

4053612 bp

Protein-coding Genes

4057 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crtac1 family proteinFHY55_RS14475Not AvailableNegative2903602 - 290510753271.3
rok family proteinFHY55_RS14480Not AvailableNegative2905104 - 290637544734.1
d-xylose abc transporter substrate-binding proteinFHY55_RS14485Not AvailablePositive2906611 - 290763035007.9
sugar abc transporter permeaseFHY55_RS14490Not AvailablePositive2907735 - 290902745549.7
atp-binding cassette domain-containing proteinFHY55_RS14495Not AvailablePositive2909027 - 290980327982.7
xylulokinaseFHY55_RS14500Not AvailablePositive2909803 - 291124249890.0
xylose isomeraseFHY55_RS14505Not AvailablePositive2911239 - 291254348215.8
type ii toxin-antitoxin system rele family toxinFHY55_RS14510Not AvailablePositive2912596 - 29128479021.97
helix-turn-helix transcriptional regulatorFHY55_RS14515Not AvailablePositive2912860 - 291320412216.4
hypothetical proteinFHY55_RS20565Not AvailablePositive2913268 - 29134386058.24

Displaying genes 2921 – 2930 of 4121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.