Oceanicola sp. D3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Oceanicola

Description

Oceanicola sp. D3 is characterized by having a single replicon, which is significant in understanding its genomic organization and stability. The strain has been cataloged under the accession number NZ_CP040932.1, indicating its availability for further study and reference within scientific databases. The presence of a single replicon suggests a streamlined genomic structure, which may contribute to the organism's adaptability and efficiency in its marine environment. This trait can be particularly advantageous for survival in various ecological niches, as it may facilitate rapid responses to environmental changes. In the context of marine microbiology, Oceanicola sp. D3 can be considered a representative of its genus, which is known for its involvement in biogeochemical processes in oceanic systems. While specific metabolic capabilities or ecological roles are not detailed here, the organism’s genomic simplicity may imply specialized functions in nutrient cycling or interactions with other marine microorganisms. The study of Oceanicola sp. D3, through its genomic insights provided by the accession number, contributes to our understanding of microbial diversity in oceanic environments. This organism's attributes may reflect broader ecological dynamics, including adaptability and resilience in the face of changing oceanic conditions, underscoring the importance of marine microorganisms in sustaining marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusOceanicola
SpeciesOceanicola sp. D3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicola sp. D3 chromosome, complete genome.

Gene Summary

Adenine Count

722342 bp

Thymine Count

717828 bp

Guanine Count

1299888 bp

Cytosine Count

1313554 bp

Genome Length

4053612 bp

Protein-coding Genes

4057 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ivb secretion system protein icmh/dotuFHY55_RS14130Not AvailableNegative2810045 - 281173960360.8
type vi secretion system baseplate subunit tsskFHY55_RS14135Not AvailableNegative2811739 - 281307650769.8
beta strand repeat-containing proteinFHY55_RS14140Not AvailableNegative2813305 - 2821833274698.0
type vi secretion system vgr family proteinFHY55_RS14145Not AvailablePositive2822242 - 282426074641.7
duf6931 family proteinFHY55_RS14150Not AvailablePositive2824282 - 282487521708.8
type vi secretion system-associated fha domain protein taghFHY55_RS14155Not AvailablePositive2825221 - 282684655428.3
ompa family proteinFHY55_RS14160Not AvailablePositive2826964 - 282747918427.7
impa family type vi secretion system proteinFHY55_RS14165Not AvailablePositive2827671 - 282902948577.2
type vi secretion system contractile sheath small subunitFHY55_RS14170Not AvailablePositive2829125 - 282966419910.3
type vi secretion system contractile sheath large subunitFHY55_RS14175Not AvailablePositive2829760 - 283125054949.6

Displaying genes 2851 – 2860 of 4121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.