Oceanicola sp. D3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Oceanicola

Description

Oceanicola sp. D3 is characterized by having a single replicon, which is significant in understanding its genomic organization and stability. The strain has been cataloged under the accession number NZ_CP040932.1, indicating its availability for further study and reference within scientific databases. The presence of a single replicon suggests a streamlined genomic structure, which may contribute to the organism's adaptability and efficiency in its marine environment. This trait can be particularly advantageous for survival in various ecological niches, as it may facilitate rapid responses to environmental changes. In the context of marine microbiology, Oceanicola sp. D3 can be considered a representative of its genus, which is known for its involvement in biogeochemical processes in oceanic systems. While specific metabolic capabilities or ecological roles are not detailed here, the organism’s genomic simplicity may imply specialized functions in nutrient cycling or interactions with other marine microorganisms. The study of Oceanicola sp. D3, through its genomic insights provided by the accession number, contributes to our understanding of microbial diversity in oceanic environments. This organism's attributes may reflect broader ecological dynamics, including adaptability and resilience in the face of changing oceanic conditions, underscoring the importance of marine microorganisms in sustaining marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusOceanicola
SpeciesOceanicola sp. D3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicola sp. D3 chromosome, complete genome.

Gene Summary

Adenine Count

722342 bp

Thymine Count

717828 bp

Guanine Count

1299888 bp

Cytosine Count

1313554 bp

Genome Length

4053612 bp

Protein-coding Genes

4057 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protocatechuate 3,4-dioxygenaseFHY55_RS12785Not AvailableNegative2525499 - 252587613457.2
alpha/beta fold hydrolaseFHY55_RS12790Not AvailableNegative2525873 - 252667328600.8
nuclear transport factor 2 family proteinFHY55_RS12795Not AvailableNegative2526673 - 252713716674.9
helix-turn-helix domain-containing proteinFHY55_RS12800Not AvailableNegative2527134 - 252794628824.3
fumarylacetoacetate hydrolase family proteinFHY55_RS12805Not AvailablePositive2528027 - 252900435276.9
2fe-2s iron-sulfur cluster-binding proteinFHY55_RS12810Not AvailableNegative2529048 - 252937111030.0
cytochrome p450FHY55_RS12815Not AvailableNegative2529368 - 253054943035.6
lysr family transcriptional regulatorFHY55_RS12820Not AvailablePositive2530631 - 253156033779.9
lysr family transcriptional regulatorFHY55_RS12825Not AvailableNegative2531562 - 253249734761.8
aldehyde dehydrogenase family proteinFHY55_RS12830Not AvailablePositive2532680 - 253408649153.8

Displaying genes 2581 – 2590 of 4121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.