Oceanicola sp. D3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Oceanicola

Description

Oceanicola sp. D3 is characterized by having a single replicon, which is significant in understanding its genomic organization and stability. The strain has been cataloged under the accession number NZ_CP040932.1, indicating its availability for further study and reference within scientific databases. The presence of a single replicon suggests a streamlined genomic structure, which may contribute to the organism's adaptability and efficiency in its marine environment. This trait can be particularly advantageous for survival in various ecological niches, as it may facilitate rapid responses to environmental changes. In the context of marine microbiology, Oceanicola sp. D3 can be considered a representative of its genus, which is known for its involvement in biogeochemical processes in oceanic systems. While specific metabolic capabilities or ecological roles are not detailed here, the organism’s genomic simplicity may imply specialized functions in nutrient cycling or interactions with other marine microorganisms. The study of Oceanicola sp. D3, through its genomic insights provided by the accession number, contributes to our understanding of microbial diversity in oceanic environments. This organism's attributes may reflect broader ecological dynamics, including adaptability and resilience in the face of changing oceanic conditions, underscoring the importance of marine microorganisms in sustaining marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusOceanicola
SpeciesOceanicola sp. D3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicola sp. D3 chromosome, complete genome.

Gene Summary

Adenine Count

722342 bp

Thymine Count

717828 bp

Guanine Count

1299888 bp

Cytosine Count

1313554 bp

Genome Length

4053612 bp

Protein-coding Genes

4057 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFHY55_RS20955Not AvailablePositive1308453 - 13085182166.63
lysr substrate-binding domain-containing proteinFHY55_RS06675Not AvailablePositive1309566 - 131051935040.3
hypothetical proteinFHY55_RS06680Not AvailableNegative1310547 - 131093314500.6
oxygen-dependent coproporphyrinogen oxidaseFHY55_RS06685Not AvailablePositive1311016 - 131189431963.7
sdr family oxidoreductaseFHY55_RS06690Not AvailableNegative1311898 - 131317245160.2
lyse family translocatorFHY55_RS06695Not AvailableNegative1313169 - 131378921304.5
hypothetical proteinFHY55_RS06700Not AvailablePositive1313895 - 131432015818.9
trimeric intracellular cation channel family proteinFHY55_RS06705Not AvailablePositive1314336 - 131499222502.6
ion channelFHY55_RS06710Not AvailablePositive1314986 - 131542015646.8
duf3883 domain-containing proteinFHY55_RS06715Not AvailableNegative1315446 - 131627631009.2

Displaying genes 1361 – 1370 of 4121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.