Rubellimicrobium rubrum

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Rubellimicrobium

Description

Rubellimicrobium rubrum is a Gram-negative rod-shaped bacterium. It possesses a single replicon, which is indicative of its genetic organization and replication mechanism. The organism is cataloged under the accession number VDFU00000000.1, providing a reference point for researchers interested in its genetic and biochemical characteristics. As a Gram-negative bacterium, Rubellimicrobium rubrum is characterized by its cell wall structure, which includes a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This structural configuration can influence its interactions with the environment and its susceptibility to antibiotics. The rod shape may facilitate mobility and nutrient uptake, allowing it to thrive in diverse ecological niches. The ecological role of Rubellimicrobium rubrum remains to be fully understood; however, its classification within the microbial community suggests potential involvement in biogeochemical cycles. Gram-negative bacteria are often key players in nutrient cycling, including the decomposition of organic matter and the cycling of nitrogen and sulfur in various ecosystems. This implies that Rubellimicrobium rubrum may contribute to soil fertility and the overall health of its habitat. In summary, Rubellimicrobium rubrum exemplifies the characteristics of a Gram-negative, rod-shaped bacterium with a singular replicon. Its potential ecological significance highlights the interconnectedness of microbial life and its essential role in maintaining ecosystem functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRubellimicrobium
SpeciesRubellimicrobium rubrum
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubellimicrobium rubrum strain YIM 131921 Scaffold100_1, whole

Gene Summary

Adenine Count

771996 bp

Thymine Count

771978 bp

Guanine Count

1531756 bp

Cytosine Count

1540091 bp

Genome Length

4615821 bp

Protein-coding Genes

4074 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorFHG66_16830Not AvailableNegative3637580 - 363826926223.5
glucuronate isomeraseFHG66_16835Not AvailablePositive3638344 - 363975052100.4
trap transporter substrate-binding proteinFHG66_16840Not AvailablePositive3639776 - 364075335735.9
trap transporter small permeaseFHG66_16845Not AvailablePositive3640820 - 364137119820.5
trap transporter large permeaseFHG66_16850Not AvailablePositive3641376 - 364265644943.0
cupin domain-containing proteinFHG66_16855Not AvailablePositive3642668 - 364297611350.3
5-dehydro-4-deoxy-d-glucuronate isomeraseFHG66_16860Not AvailablePositive3642990 - 364381430262.3
2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdudFHG66_16865Not AvailablePositive3643811 - 364454825583.3
mannitol dehydrogenase family proteinFHG66_16870Not AvailablePositive3644526 - 364597752732.0
mannonate dehydrataseFHG66_16875Not AvailablePositive3645974 - 364715542330.2

Displaying genes 3271 – 3280 of 4141 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.