Sphingorhabdus sp. SMR4y

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. SMR4y is characterized by possessing a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP022336.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The genus Sphingorhabdus is known for its role in various ecological niches, particularly in environments where organic matter decomposition occurs. While specific traits of Sphingorhabdus sp. SMR4y are not detailed in the provided information, the single replicon suggests it may have adaptations that enhance its survival and functionality in its habitat. The presence of this organism in microbial communities could have implications for nutrient cycling and soil health, as members of the Sphingorhabdus genus are often involved in the breakdown of complex organic compounds. This underscores the importance of understanding such microorganisms, as they may play critical roles in maintaining ecosystem dynamics and facilitating the degradation of organic matter. Further studies on Sphingorhabdus sp. SMR4y could lead to insights into its ecological functions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. SMR4y
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. SMR4y chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3314 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class ii 3-deoxy-7-phosphoheptulonate synthaseSPHFLASMR4Y_RS14835Not AvailableNegative3071146 - 307251950498.0
cell wall hydrolaseSPHFLASMR4Y_RS17395Not AvailableNegative3072639 - 307396147657.8
mate family efflux transporterSPHFLASMR4Y_RS14845Not AvailableNegative3074083 - 307551651461.5
duf2891 domain-containing proteinSPHFLASMR4Y_RS14850Not AvailablePositive3075555 - 307676044263.2
sensor histidine kinaseSPHFLASMR4Y_RS14855Not AvailablePositive3076757 - 307793244238.9
lytr/algr family response regulator transcription factorSPHFLASMR4Y_RS14860Not AvailablePositive3077935 - 307869628556.8
caib/baif coa transferase family proteinSPHFLASMR4Y_RS14865Not AvailableNegative3078654 - 307969437140.6
pilz domain-containing proteinSPHFLASMR4Y_RS14870Not AvailableNegative3079783 - 308019315351.6
rna polymerase-binding protein dksaSPHFLASMR4Y_RS14875Not AvailableNegative3080386 - 308084417454.3
hypothetical proteinSPHFLASMR4Y_RS17200Not AvailableNegative3081576 - 308216921571.5

Displaying genes 2991 – 3000 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.