Sphingorhabdus sp. SMR4y

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. SMR4y is characterized by possessing a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP022336.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The genus Sphingorhabdus is known for its role in various ecological niches, particularly in environments where organic matter decomposition occurs. While specific traits of Sphingorhabdus sp. SMR4y are not detailed in the provided information, the single replicon suggests it may have adaptations that enhance its survival and functionality in its habitat. The presence of this organism in microbial communities could have implications for nutrient cycling and soil health, as members of the Sphingorhabdus genus are often involved in the breakdown of complex organic compounds. This underscores the importance of understanding such microorganisms, as they may play critical roles in maintaining ecosystem dynamics and facilitating the degradation of organic matter. Further studies on Sphingorhabdus sp. SMR4y could lead to insights into its ecological functions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. SMR4y
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. SMR4y chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3314 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide-methionine (r)-s-oxide reductase msrbSPHFLASMR4Y_RS11190Not AvailablePositive2321513 - 232191114754.0
transglycosylase domain-containing proteinSPHFLASMR4Y_RS11195Not AvailablePositive2321999 - 232411375870.5
m48 family metallopeptidaseSPHFLASMR4Y_RS11200Not AvailableNegative2324120 - 232486628156.8
ycgn family cysteine cluster proteinSPHFLASMR4Y_RS11205Not AvailableNegative2324853 - 232529916657.8
sco family proteinSPHFLASMR4Y_RS11210Not AvailableNegative2325287 - 232590722211.4
ankyrin repeat domain-containing proteinSPHFLASMR4Y_RS11215Not AvailablePositive2326003 - 232665623581.0
mmcb family dna repair proteinSPHFLASMR4Y_RS11220Not AvailableNegative2326664 - 232718219027.0
cell wall hydrolaseSPHFLASMR4Y_RS11225Not AvailableNegative2327264 - 232797125966.7
duf1491 family proteinSPHFLASMR4Y_RS11230Not AvailableNegative2328176 - 232851412810.6
paai family thioesteraseSPHFLASMR4Y_RS11235Not AvailableNegative2328507 - 232898917765.9

Displaying genes 2281 – 2290 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.