Sphingorhabdus sp. SMR4y

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. SMR4y is characterized by possessing a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP022336.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The genus Sphingorhabdus is known for its role in various ecological niches, particularly in environments where organic matter decomposition occurs. While specific traits of Sphingorhabdus sp. SMR4y are not detailed in the provided information, the single replicon suggests it may have adaptations that enhance its survival and functionality in its habitat. The presence of this organism in microbial communities could have implications for nutrient cycling and soil health, as members of the Sphingorhabdus genus are often involved in the breakdown of complex organic compounds. This underscores the importance of understanding such microorganisms, as they may play critical roles in maintaining ecosystem dynamics and facilitating the degradation of organic matter. Further studies on Sphingorhabdus sp. SMR4y could lead to insights into its ecological functions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. SMR4y
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. SMR4y chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3314 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ai-2e family transporterSPHFLASMR4Y_RS11090Not AvailableNegative2299406 - 230049739701.8
ligase-associated dna damage response dexh box helicaseSPHFLASMR4Y_RS11095Not AvailablePositive2300683 - 230319392751.6
retroviral-like aspartic protease family proteinSPHFLASMR4Y_RS11100Not AvailablePositive2303253 - 230420334403.0
retroviral-like aspartic protease family proteinSPHFLASMR4Y_RS11105Not AvailablePositive2304309 - 230528335518.1
duf3187 family proteinSPHFLASMR4Y_RS11110Not AvailablePositive2305448 - 230627228106.0
glutathione s-transferaseSPHFLASMR4Y_RS11115Not AvailableNegative2306526 - 230717624481.2
rhodanese-related sulfurtransferaseSPHFLASMR4Y_RS11120Not AvailableNegative2307173 - 230811134696.0
ligase-associated dna damage response endonuclease pdemSPHFLASMR4Y_RS11125Not AvailablePositive2308193 - 230892126284.6
8-amino-7-oxononanoate synthaseSPHFLASMR4Y_RS11130Not AvailablePositive2308939 - 231008140258.1
dethiobiotin synthaseSPHFLASMR4Y_RS11135Not AvailablePositive2310078 - 231070721863.3

Displaying genes 2261 – 2270 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.