Sphingorhabdus sp. SMR4y

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. SMR4y is characterized by possessing a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP022336.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The genus Sphingorhabdus is known for its role in various ecological niches, particularly in environments where organic matter decomposition occurs. While specific traits of Sphingorhabdus sp. SMR4y are not detailed in the provided information, the single replicon suggests it may have adaptations that enhance its survival and functionality in its habitat. The presence of this organism in microbial communities could have implications for nutrient cycling and soil health, as members of the Sphingorhabdus genus are often involved in the breakdown of complex organic compounds. This underscores the importance of understanding such microorganisms, as they may play critical roles in maintaining ecosystem dynamics and facilitating the degradation of organic matter. Further studies on Sphingorhabdus sp. SMR4y could lead to insights into its ecological functions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. SMR4y
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. SMR4y chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3314 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps-assembly protein lptdSPHFLASMR4Y_RS06605Not AvailablePositive1401518 - 140373181890.5
peptidylprolyl isomeraseSPHFLASMR4Y_RS06610Not AvailablePositive1403830 - 140519448787.0
4-hydroxythreonine-4-phosphate dehydrogenase pdxaSPHFLASMR4Y_RS06615Not AvailablePositive1405194 - 140620135988.2
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaSPHFLASMR4Y_RS06620Not AvailablePositive1406198 - 140702529975.5
malate synthase gSPHFLASMR4Y_RS06625Not AvailableNegative1407022 - 140912775951.0
hydrolaseSPHFLASMR4Y_RS06630Not AvailablePositive1409580 - 141078842383.5
arginine n-succinyltransferaseSPHFLASMR4Y_RS06635Not AvailablePositive1410785 - 141179537225.1
n-succinylarginine dihydrolaseSPHFLASMR4Y_RS06640Not AvailablePositive1411792 - 141305444844.2
hypothetical proteinSPHFLASMR4Y_RS06645Not AvailablePositive1413155 - 14133858727.9
Tmrna,resume consensus sequence (at 213): tataagtgcaaacgataaNot AvailableNot AvailablePositive1413481 - 1413826Not Available

Displaying genes 1351 – 1360 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.