Sphingorhabdus sp. SMR4y

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. SMR4y is characterized by possessing a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP022336.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The genus Sphingorhabdus is known for its role in various ecological niches, particularly in environments where organic matter decomposition occurs. While specific traits of Sphingorhabdus sp. SMR4y are not detailed in the provided information, the single replicon suggests it may have adaptations that enhance its survival and functionality in its habitat. The presence of this organism in microbial communities could have implications for nutrient cycling and soil health, as members of the Sphingorhabdus genus are often involved in the breakdown of complex organic compounds. This underscores the importance of understanding such microorganisms, as they may play critical roles in maintaining ecosystem dynamics and facilitating the degradation of organic matter. Further studies on Sphingorhabdus sp. SMR4y could lead to insights into its ecological functions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. SMR4y
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. SMR4y chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3314 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
leu/phe/val dehydrogenaseSPHFLASMR4Y_RS06310Not AvailableNegative1331913 - 133296536931.2
Trna-hisNot AvailableNot AvailablePositive1333095 - 1333171Not Available
type ii secretion system minor pseudopilin gspkSPHFLASMR4Y_RS06320Not AvailableNegative1333262 - 133425736011.2
type ii secretion system minor pseudopilin gspjSPHFLASMR4Y_RS06325Not AvailableNegative1334254 - 133486823235.8
prolyl hydroxylase family proteinSPHFLASMR4Y_RS06330Not AvailablePositive1334976 - 133561724543.9
nramp family divalent metal transporterSPHFLASMR4Y_RS06335Not AvailablePositive1335646 - 133684841792.5
lamb/ycsf family proteinSPHFLASMR4Y_RS06340Not AvailablePositive1336845 - 133760326357.7
5-oxoprolinase subunit b family proteinSPHFLASMR4Y_RS06345Not AvailablePositive1337600 - 133827124189.6
biotin-dependent carboxyltransferase family proteinSPHFLASMR4Y_RS06350Not AvailablePositive1338268 - 133921533407.1
50s ribosomal protein l31SPHFLASMR4Y_RS06355Not AvailableNegative1339249 - 13394798495.92

Displaying genes 1291 – 1300 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.