Sphingorhabdus sp. SMR4y

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. SMR4y is characterized by possessing a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP022336.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The genus Sphingorhabdus is known for its role in various ecological niches, particularly in environments where organic matter decomposition occurs. While specific traits of Sphingorhabdus sp. SMR4y are not detailed in the provided information, the single replicon suggests it may have adaptations that enhance its survival and functionality in its habitat. The presence of this organism in microbial communities could have implications for nutrient cycling and soil health, as members of the Sphingorhabdus genus are often involved in the breakdown of complex organic compounds. This underscores the importance of understanding such microorganisms, as they may play critical roles in maintaining ecosystem dynamics and facilitating the degradation of organic matter. Further studies on Sphingorhabdus sp. SMR4y could lead to insights into its ecological functions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. SMR4y
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. SMR4y chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3314 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine cleavage system aminomethyltransferase gcvtSPHFLASMR4Y_RS00480Not AvailablePositive117480 - 11862241050.1
glycine cleavage system protein gcvhSPHFLASMR4Y_RS00485Not AvailablePositive118646 - 11901713445.2
aminomethyl-transferring glycine dehydrogenase subunit gcvpaSPHFLASMR4Y_RS00490Not AvailablePositive119169 - 12052748860.7
aminomethyl-transferring glycine dehydrogenase subunit gcvpbSPHFLASMR4Y_RS00495Not AvailablePositive120524 - 12210756714.6
bile acid:sodium symporter family proteinSPHFLASMR4Y_RS00500Not AvailablePositive122232 - 12320934390.3
methyltransferase family proteinSPHFLASMR4Y_RS00505Not AvailableNegative123206 - 12369418289.9
duf938 domain-containing proteinSPHFLASMR4Y_RS00510Not AvailablePositive123748 - 12438923507.0
long-chain-fatty-acid--coa ligaseSPHFLASMR4Y_RS00515Not AvailablePositive124617 - 12619156932.9
paai family thioesteraseSPHFLASMR4Y_RS00520Not AvailablePositive126326 - 12675115349.5
lysr family transcriptional regulatorSPHFLASMR4Y_RS00525Not AvailableNegative126819 - 12773033786.9

Displaying genes 121 – 130 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.