Sphingorhabdus sp. SMR4y

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. SMR4y is characterized by possessing a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP022336.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The genus Sphingorhabdus is known for its role in various ecological niches, particularly in environments where organic matter decomposition occurs. While specific traits of Sphingorhabdus sp. SMR4y are not detailed in the provided information, the single replicon suggests it may have adaptations that enhance its survival and functionality in its habitat. The presence of this organism in microbial communities could have implications for nutrient cycling and soil health, as members of the Sphingorhabdus genus are often involved in the breakdown of complex organic compounds. This underscores the importance of understanding such microorganisms, as they may play critical roles in maintaining ecosystem dynamics and facilitating the degradation of organic matter. Further studies on Sphingorhabdus sp. SMR4y could lead to insights into its ecological functions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. SMR4y
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. SMR4y chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3314 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna pseudouridine(38-40) synthase truaSPHFLASMR4Y_RS04825Not AvailablePositive1018095 - 101885328033.2
xrta/pep-cterm system amidotransferaseSPHFLASMR4Y_RS04830Not AvailableNegative1018839 - 102073470311.1
exosortase aSPHFLASMR4Y_RS04835Not AvailableNegative1020744 - 102229756693.6
tigr03087 family pep-cterm/xrta system glycosyltransferaseSPHFLASMR4Y_RS04840Not AvailableNegative1022294 - 102352044189.9
femab family xrta/pep-cterm system-associated proteinSPHFLASMR4Y_RS04845Not AvailableNegative1023517 - 102459039328.7
tigr01244 family sulfur transferaseSPHFLASMR4Y_RS04850Not AvailableNegative1024590 - 102538130160.5
aaa family atpaseSPHFLASMR4Y_RS04860Not AvailableNegative1025821 - 102673832981.5
xrta system polysaccharide chain length determinantSPHFLASMR4Y_RS04865Not AvailableNegative1026749 - 102828155332.4
xrta/pep-cterm system exopolysaccharide export proteinSPHFLASMR4Y_RS04870Not AvailableNegative1028321 - 102892321599.3
pyridoxal-dependent decarboxylase, exosortase a system-associatedSPHFLASMR4Y_RS04875Not AvailableNegative1029151 - 103038643122.6

Displaying genes 991 – 1000 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.