Paroceanicella profunda

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paroceanicella

Description

Paroceanicella profunda is a bacterium characterized by having two replicons, which indicates a complex genomic structure that may contribute to its adaptability in various environments. The organism is cataloged under the GenBank accessions NZ_CP040821.1 and NZ_CP040824.1, which provide sequences for its genomic study. The presence of two replicons in its genetic makeup suggests that Paroceanicella profunda may have evolved mechanisms for enhanced genetic regulation and stability, potentially allowing it to thrive in diverse ecological niches. This trait could be advantageous for survival in fluctuating environments, as it may facilitate the acquisition of genetic material through horizontal gene transfer. Overall, the genomic structure of Paroceanicella profunda, as indicated by its two replicons, could play a significant role in its ecological interactions and evolutionary strategies, enabling it to adapt to various environmental conditions. Further research into its genetic characteristics and ecological roles could provide deeper insights into its functionality within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParoceanicella
SpeciesParoceanicella profunda
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paroceanicella profunda strain D4M1 plasmid pD4M1F, complete

Gene Summary

Adenine Count

15619 bp

Thymine Count

16439 bp

Guanine Count

40359 bp

Cytosine Count

39818 bp

Genome Length

112235 bp

Protein-coding Genes

91 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family dna-binding transcriptional regulatorFDP22_RS22605Not AvailableNegative166043 - 16709237372.8
alpha-amylase family glycosyl hydrolaseFDP22_RS22610Not AvailablePositive167323 - 16902360688.2
trap transporter substrate-binding protein dctpFDP22_RS22615Not AvailablePositive169356 - 17030934504.3
trap transporter small permease subunitFDP22_RS22620Not AvailablePositive170380 - 17091919511.4
trap transporter large permeaseFDP22_RS22625Not AvailablePositive170921 - 17223746185.4
lyse family translocatorFDP22_RS22630Not AvailableNegative172298 - 17292721364.6
asparaginaseFDP22_RS22635Not AvailableNegative173619 - 17460833517.4
non-heme iron oxygenase ferredoxin subunitFDP22_RS22640Not AvailableNegative174605 - 17494011798.7
dihydroorotate dehydrogenaseFDP22_RS22645Not AvailableNegative174937 - 17589033191.4
dihydroorotate dehydrogenase electron transfer subunitFDP22_RS22650Not AvailableNegative175884 - 17672929994.4

Displaying genes 231 – 240 of 258 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.