Microbulbifer harenosus

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Microbulbiferaceae

Genus

Microbulbifer

Description

Microbulbifer harenosus is a Gram-negative bacterium characterized by its rod shape. It possesses a single replicon, which is significant for its genetic organization and replication. The strain is cataloged under the accession number VANI00000000.1, indicating its genomic data is available for further study and analysis. Microbulbifer harenosus is part of a broader group of bacteria that are often found in marine environments, which suggests ecological roles in nutrient cycling and interactions with other marine organisms. The Gram-negative nature of this bacterium may also imply certain physiological traits, such as the presence of an outer membrane that can influence its interactions with the environment and other microorganisms. Understanding the traits of Microbulbifer harenosus can provide insights into its potential applications in biotechnology and environmental microbiology, particularly in marine ecosystems. Its rod shape and genetic characteristics may contribute to its adaptability in fluctuating environmental conditions, highlighting the ecological significance of this bacterium in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyMicrobulbiferaceae
GenusMicrobulbifer
SpeciesMicrobulbifer harenosus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbulbifer harenosus strain HB161719 Contig_69_, whole genome

Gene Summary

Adenine Count

977925 bp

Thymine Count

973777 bp

Guanine Count

1355547 bp

Cytosine Count

1359907 bp

Genome Length

4667156 bp

Protein-coding Genes

3775 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFDY93_00095Not AvailableNegative16136 - 1657916641.9
4-hydroxy-tetrahydrodipicolinate reductaseFDY93_00100Not AvailablePositive16764 - 1757328044.4
30s ribosomal protein s6--l-glutamate ligaseFDY93_00105Not AvailablePositive17592 - 1899851383.4
yfir family proteinFDY93_00110Not AvailablePositive19256 - 1978619621.1
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitFDY93_00115Not AvailablePositive20369 - 2150540767.5
carbamoyl-phosphate synthase large subunitFDY93_00120Not AvailablePositive21627 - 24857118439.0
transcription elongation factor greaFDY93_00125Not AvailablePositive24972 - 2544817337.5
hypothetical proteinFDY93_00130Not AvailableNegative25653 - 2654031017.7
hypothetical proteinFDY93_00135Not AvailableNegative27061 - 2795431390.6
hypothetical proteinFDY93_00140Not AvailableNegative27995 - 2859421153.3

Displaying genes 21 – 30 of 3833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm00116522-oxooctanoateC8H13O3Chemical structure of 2-oxooctanoateNot available
Average157.19Da
Monoisotopic157.087017859Da

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.