Novosphingobium sp. EMRT-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. EMRT-2 is a bacterium characterized by the presence of flagella, which suggests it possesses motility capabilities. This trait may play a significant role in its ecological interactions and adaptability within various environments. The genome of Novosphingobium sp. EMRT-2 is notably complex, comprising five replicons. This multi-replicon structure may confer advantages in terms of genetic diversity and adaptability, potentially allowing the organism to thrive in fluctuating conditions. The presence of multiple replicons can facilitate a more flexible response to environmental stresses, which is essential for survival in diverse habitats. The genomic information for Novosphingobium sp. EMRT-2 is documented under several accession numbers: NZ_CP039697.1, NZ_CP039699.1, NZ_CP039695.1, NZ_CP039696.1, and NZ_CP039698.1. These accessions provide a resource for further research into its genetic makeup and functional capabilities. In summary, the flagellated motility of Novosphingobium sp. EMRT-2, combined with its multi-replicon genome, suggests an organism well-adapted to its ecological niche. The presence of flagella may enhance its ability to navigate its environment, while the genomic complexity could support diverse metabolic functions, allowing it to exploit various substrates and adapt to changing conditions. This adaptability underscores the ecological significance of Novosphingobium sp. EMRT-2 in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. EMRT-2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. EMRT-2 chromosome, complete genome.

Gene Summary

Adenine Count

625288 bp

Thymine Count

620106 bp

Guanine Count

1209454 bp

Cytosine Count

1213194 bp

Genome Length

3668042 bp

Protein-coding Genes

3433 genes

Non-Coding Genes

171 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uroporphyrinogen-iii synthaseFA702_RS16325Not AvailableNegative3347704 - 334838724013.2
hydroxymethylbilane synthaseFA702_RS16330Not AvailableNegative3348404 - 334928830755.9
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadFA702_RS16335Not AvailablePositive3349418 - 335048235985.5
nad(p)h-dependent glycerol-3-phosphate dehydrogenaseFA702_RS16340Not AvailablePositive3350479 - 335149834180.4
lipopolysaccharide biosynthesis proteinFA702_RS16345Not AvailablePositive3351491 - 335298152538.1
vwa domain-containing proteinFA702_RS16350Not AvailablePositive3353086 - 335478060194.7
helix-hairpin-helix domain-containing proteinFA702_RS16355Not AvailablePositive3354891 - 335543318989.7
duf2238 domain-containing proteinFA702_RS16360Not AvailableNegative3355441 - 335606122211.3
glycosyltransferaseFA702_RS16365Not AvailableNegative3356066 - 335719040630.6
3-isopropylmalate dehydrogenaseFA702_RS16370Not AvailableNegative3357203 - 335826137696.1

Displaying genes 3311 – 3320 of 4597 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.