Streptomyces oryziradicis

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Actinacidiphila

Description

Streptomyces oryziradicis is a Gram-positive bacterium characterized by its rod shape. This organism is part of the Streptomyces genus, which is known for its significant role in natural antibiotic production and soil ecology. S. oryziradicis possesses a single replicon, indicating a streamlined genetic organization that can contribute to its adaptability in various environments. The accessions for S. oryziradicis include SUMC00000000.1, which provides a reference for researchers studying this specific strain. The genetic and phenotypic traits of S. oryziradicis may enhance its ability to thrive in soil environments, where it likely participates in nutrient cycling and interacts with other microbial communities. An ecological insight into S. oryziradicis is its potential role in agricultural systems, particularly in rice cultivation, as suggested by its name. The bacterium may contribute to the health of rice plants through processes such as promoting plant growth or suppressing plant pathogens. This highlights the importance of studying Streptomyces species like S. oryziradicis for their beneficial applications in sustainable agriculture and soil health management.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusActinacidiphila
SpeciesActinacidiphila oryziradicis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Actinacidiphila oryziradicis strain NEAU-C40 Scaffold389, whole

Gene Summary

Adenine Count

1762751 bp

Thymine Count

1756761 bp

Guanine Count

3995399 bp

Cytosine Count

4015694 bp

Genome Length

11530635 bp

Protein-coding Genes

9834 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseFCI23_15275Not AvailablePositive3228609 - 323038460835.0
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseFCI23_15280Not AvailablePositive3230381 - 323179949254.9
phospho-n-acetylmuramoyl-pentapeptide- transferaseFCI23_15285Not AvailablePositive3231796 - 323286037758.3
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseFCI23_15290Not AvailablePositive3232857 - 323430250264.5
putative lipid ii flippase ftswFCI23_15295Not AvailablePositive3234331 - 323588454538.6
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseFCI23_15300Not AvailablePositive3235891 - 323698538600.2
ftsq-type potra domain-containing proteinFCI23_15305Not AvailablePositive3237077 - 323783526443.3
cell division protein ftszFCI23_15310Not AvailablePositive3238070 - 323929642096.9
peptidoglycan editing factor pgefFCI23_15315Not AvailablePositive3239310 - 324009226587.6
yggs family pyridoxal phosphate-dependent enzymeFCI23_15320Not AvailablePositive3240062 - 324083526413.5

Displaying genes 2861 – 2870 of 9928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.