Sphingobium sp. PAMC28499

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. PAMC28499 is a notable strain characterized by the presence of flagella, which suggests a motile lifestyle. This motility may provide ecological advantages, such as improved access to nutrients and the ability to colonize various environments. The strain is defined by a single replicon, indicating a streamlined genome structure that can influence its adaptability and metabolic capabilities. The genomic information for Sphingobium sp. PAMC28499 is cataloged under the accession number NZ_CP039248.1, which facilitates further research and comparison with other strains within the Sphingobium genus. The Sphingobium genus is known for its environmental significance, particularly in the biodegradation of pollutants, which may be relevant for Sphingobium sp. PAMC28499. The presence of flagella and its genomic characteristics suggest that Sphingobium sp. PAMC28499 may play a role in bioremediation processes, potentially contributing to the breakdown of organic contaminants in various ecosystems. Understanding its motility and genetic framework could provide insights into its ecological interactions and its potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. PAMC28499
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. PAMC28499 chromosome, complete genome.

Gene Summary

Adenine Count

866208 bp

Thymine Count

867213 bp

Guanine Count

1573218 bp

Cytosine Count

1573976 bp

Genome Length

4880615 bp

Protein-coding Genes

4499 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carboxylate--amine ligaseE5554_RS02960Not AvailablePositive613823 - 61503144742.4
phosphotyrosine protein phosphataseE5554_RS02965Not AvailableNegative615000 - 61555120067.3
laci family dna-binding transcriptional regulatorE5554_RS02970Not AvailablePositive615643 - 61667736056.5
glucuronate isomeraseE5554_RS02975Not AvailableNegative616682 - 61809152397.8
uxaa family hydrolaseE5554_RS02980Not AvailablePositive618138 - 61966753132.7
hu family dna-binding proteinE5554_RS02985Not AvailableNegative619779 - 6200549373.11
Trna-serNot AvailableNot AvailablePositive620254 - 620345Not Available
duf1134 domain-containing proteinE5554_RS02995Not AvailablePositive620577 - 62138027577.6
dna polymerase ivE5554_RS03000Not AvailableNegative621384 - 62248140190.4
yced family proteinE5554_RS03005Not AvailableNegative622530 - 62307519479.1

Displaying genes 651 – 660 of 4603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.