Sphingobium sp. PAMC28499

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. PAMC28499 is a notable strain characterized by the presence of flagella, which suggests a motile lifestyle. This motility may provide ecological advantages, such as improved access to nutrients and the ability to colonize various environments. The strain is defined by a single replicon, indicating a streamlined genome structure that can influence its adaptability and metabolic capabilities. The genomic information for Sphingobium sp. PAMC28499 is cataloged under the accession number NZ_CP039248.1, which facilitates further research and comparison with other strains within the Sphingobium genus. The Sphingobium genus is known for its environmental significance, particularly in the biodegradation of pollutants, which may be relevant for Sphingobium sp. PAMC28499. The presence of flagella and its genomic characteristics suggest that Sphingobium sp. PAMC28499 may play a role in bioremediation processes, potentially contributing to the breakdown of organic contaminants in various ecosystems. Understanding its motility and genetic framework could provide insights into its ecological interactions and its potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. PAMC28499
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. PAMC28499 chromosome, complete genome.

Gene Summary

Adenine Count

866208 bp

Thymine Count

867213 bp

Guanine Count

1573218 bp

Cytosine Count

1573976 bp

Genome Length

4880615 bp

Protein-coding Genes

4499 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal phosphate-dependent aminotransferaseE5554_RS20205Not AvailablePositive4255717 - 425687441456.9
hypothetical proteinE5554_RS20210Not AvailableNegative4256913 - 42571588152.57
asparaginase domain-containing proteinE5554_RS20215Not AvailableNegative4257240 - 425774317997.8
pyrroline-5-carboxylate reductase family proteinE5554_RS20220Not AvailableNegative4257806 - 425862127820.0
ybjn domain-containing proteinE5554_RS20225Not AvailableNegative4258645 - 425915118824.0
accessory factor ubik family proteinE5554_RS20230Not AvailableNegative4259194 - 425950511158.1
tspo/mbr family proteinE5554_RS20235Not AvailableNegative4259546 - 426009419959.0
efflux rnd transporter permease subunitE5554_RS20240Not AvailableNegative4260113 - 4263217111324.0
efflux rnd transporter periplasmic adaptor subunitE5554_RS20245Not AvailableNegative4263222 - 426428637004.9
tlya family rna methyltransferaseE5554_RS20250Not AvailableNegative4264375 - 426511226211.5

Displaying genes 4061 – 4070 of 4603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.