Sphingobium sp. PAMC28499

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. PAMC28499 is a notable strain characterized by the presence of flagella, which suggests a motile lifestyle. This motility may provide ecological advantages, such as improved access to nutrients and the ability to colonize various environments. The strain is defined by a single replicon, indicating a streamlined genome structure that can influence its adaptability and metabolic capabilities. The genomic information for Sphingobium sp. PAMC28499 is cataloged under the accession number NZ_CP039248.1, which facilitates further research and comparison with other strains within the Sphingobium genus. The Sphingobium genus is known for its environmental significance, particularly in the biodegradation of pollutants, which may be relevant for Sphingobium sp. PAMC28499. The presence of flagella and its genomic characteristics suggest that Sphingobium sp. PAMC28499 may play a role in bioremediation processes, potentially contributing to the breakdown of organic contaminants in various ecosystems. Understanding its motility and genetic framework could provide insights into its ecological interactions and its potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. PAMC28499
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. PAMC28499 chromosome, complete genome.

Gene Summary

Adenine Count

866208 bp

Thymine Count

867213 bp

Guanine Count

1573218 bp

Cytosine Count

1573976 bp

Genome Length

4880615 bp

Protein-coding Genes

4499 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosine recombinaseE5554_RS19850Not AvailableNegative4180968 - 418189733265.2
hypothetical proteinE5554_RS19855Not AvailableNegative4181912 - 418374163797.9
hypothetical proteinE5554_RS19860Not AvailableNegative4183747 - 41839326705.37
shikimate kinaseE5554_RS19865Not AvailablePositive4184027 - 418457520130.5
3-dehydroquinate synthaseE5554_RS19870Not AvailablePositive4184566 - 418567539170.1
50s ribosomal protein l31E5554_RS19875Not AvailableNegative4186088 - 41863128269.71
3-hydroxyacyl-acp dehydratase fabzE5554_RS19880Not AvailableNegative4186427 - 418690617071.1
omph family outer membrane proteinE5554_RS19885Not AvailableNegative4186911 - 418757922832.2
outer membrane protein assembly factor bamaE5554_RS19890Not AvailableNegative4187579 - 419021597618.3
rip metalloprotease rsepE5554_RS19895Not AvailableNegative4190304 - 419143740617.9

Displaying genes 3991 – 4000 of 4603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.