Sphingobium sp. PAMC28499

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. PAMC28499 is a notable strain characterized by the presence of flagella, which suggests a motile lifestyle. This motility may provide ecological advantages, such as improved access to nutrients and the ability to colonize various environments. The strain is defined by a single replicon, indicating a streamlined genome structure that can influence its adaptability and metabolic capabilities. The genomic information for Sphingobium sp. PAMC28499 is cataloged under the accession number NZ_CP039248.1, which facilitates further research and comparison with other strains within the Sphingobium genus. The Sphingobium genus is known for its environmental significance, particularly in the biodegradation of pollutants, which may be relevant for Sphingobium sp. PAMC28499. The presence of flagella and its genomic characteristics suggest that Sphingobium sp. PAMC28499 may play a role in bioremediation processes, potentially contributing to the breakdown of organic contaminants in various ecosystems. Understanding its motility and genetic framework could provide insights into its ecological interactions and its potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. PAMC28499
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. PAMC28499 chromosome, complete genome.

Gene Summary

Adenine Count

866208 bp

Thymine Count

867213 bp

Guanine Count

1573218 bp

Cytosine Count

1573976 bp

Genome Length

4880615 bp

Protein-coding Genes

4499 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isopenicillin n synthase family dioxygenaseE5554_RS16610Not AvailableNegative3479433 - 348043136450.1
lysr family transcriptional regulatorE5554_RS16615Not AvailablePositive3480568 - 348152133875.9
phosphoribosyltransferaseE5554_RS16620Not AvailablePositive3481531 - 348206419774.4
bile acid:sodium symporter family proteinE5554_RS16625Not AvailableNegative3482089 - 348307534642.7
oxalurate catabolism protein hpxzE5554_RS16630Not AvailableNegative3483072 - 348345213892.3
atze family amidohydrolaseE5554_RS16635Not AvailableNegative3483449 - 348478645053.0
duf4089 domain-containing proteinE5554_RS16640Not AvailableNegative3484783 - 34849626134.36
hydroxyisourate hydrolaseE5554_RS16645Not AvailableNegative3484969 - 348529811870.3
nad(p)-binding domain-containing proteinE5554_RS16650Not AvailableNegative3485295 - 348671651958.0
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylaseE5554_RS16655Not AvailableNegative3486713 - 348718617199.4

Displaying genes 3341 – 3350 of 4603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.