Sphingobium sp. PAMC28499

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. PAMC28499 is a notable strain characterized by the presence of flagella, which suggests a motile lifestyle. This motility may provide ecological advantages, such as improved access to nutrients and the ability to colonize various environments. The strain is defined by a single replicon, indicating a streamlined genome structure that can influence its adaptability and metabolic capabilities. The genomic information for Sphingobium sp. PAMC28499 is cataloged under the accession number NZ_CP039248.1, which facilitates further research and comparison with other strains within the Sphingobium genus. The Sphingobium genus is known for its environmental significance, particularly in the biodegradation of pollutants, which may be relevant for Sphingobium sp. PAMC28499. The presence of flagella and its genomic characteristics suggest that Sphingobium sp. PAMC28499 may play a role in bioremediation processes, potentially contributing to the breakdown of organic contaminants in various ecosystems. Understanding its motility and genetic framework could provide insights into its ecological interactions and its potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. PAMC28499
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. PAMC28499 chromosome, complete genome.

Gene Summary

Adenine Count

866208 bp

Thymine Count

867213 bp

Guanine Count

1573218 bp

Cytosine Count

1573976 bp

Genome Length

4880615 bp

Protein-coding Genes

4499 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinE5554_RS16510Not AvailablePositive3458136 - 345846511305.1
type iv conjugative transfer system protein tralE5554_RS16515Not AvailablePositive3458583 - 345884910250.8
trae/trak family type iv conjugative transfer system proteinE5554_RS16520Not AvailablePositive3458857 - 345949223551.5
type-f conjugative transfer system secretin trakE5554_RS16525Not AvailablePositive3459542 - 346025525538.2
trab/virb10 family proteinE5554_RS16530Not AvailablePositive3460252 - 346160145983.5
trav family lipoproteinE5554_RS16535Not AvailablePositive3461634 - 346225422627.8
trac family proteinE5554_RS16540Not AvailablePositive3462251 - 346477993120.7
hypothetical proteinE5554_RS16545Not AvailablePositive3464776 - 346512312575.6
hypothetical proteinE5554_RS16550Not AvailablePositive3465120 - 34653598544.63
conjugal transfer protein trawE5554_RS16555Not AvailablePositive3465406 - 346597821076.5

Displaying genes 3321 – 3330 of 4603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.