Sphingobium sp. PAMC28499

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. PAMC28499 is a notable strain characterized by the presence of flagella, which suggests a motile lifestyle. This motility may provide ecological advantages, such as improved access to nutrients and the ability to colonize various environments. The strain is defined by a single replicon, indicating a streamlined genome structure that can influence its adaptability and metabolic capabilities. The genomic information for Sphingobium sp. PAMC28499 is cataloged under the accession number NZ_CP039248.1, which facilitates further research and comparison with other strains within the Sphingobium genus. The Sphingobium genus is known for its environmental significance, particularly in the biodegradation of pollutants, which may be relevant for Sphingobium sp. PAMC28499. The presence of flagella and its genomic characteristics suggest that Sphingobium sp. PAMC28499 may play a role in bioremediation processes, potentially contributing to the breakdown of organic contaminants in various ecosystems. Understanding its motility and genetic framework could provide insights into its ecological interactions and its potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. PAMC28499
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. PAMC28499 chromosome, complete genome.

Gene Summary

Adenine Count

866208 bp

Thymine Count

867213 bp

Guanine Count

1573218 bp

Cytosine Count

1573976 bp

Genome Length

4880615 bp

Protein-coding Genes

4499 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
luxr family transcriptional regulatorE5554_RS16310Not AvailablePositive3407785 - 340854328061.9
acyl-homoserine-lactone synthaseE5554_RS16315Not AvailablePositive3408682 - 340929622517.3
phytanoyl-coa dioxygenase family proteinE5554_RS16320Not AvailablePositive3409308 - 341020733402.8
marr family transcriptional regulatorE5554_RS16325Not AvailablePositive3410250 - 341067215973.3
copg family transcriptional regulatorE5554_RS16330Not AvailablePositive3410704 - 34109287908.52
ta system vapc family ribonuclease toxinE5554_RS16335Not AvailablePositive3410925 - 341136215629.8
nucleotidyltransferase and hepn domain-containing proteinE5554_RS16340Not AvailablePositive3411362 - 341228235224.9
hypothetical proteinE5554_RS16345Not AvailablePositive3412601 - 341425061590.0
hypothetical proteinE5554_RS16350Not AvailablePositive3414280 - 341526636856.3
nerd domain-containing proteinE5554_RS16355Not AvailableNegative3415960 - 341683232868.1

Displaying genes 3281 – 3290 of 4603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.